Mmin023769.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- rst2
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000008.1:300535-309898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.82 57 5.2 0.0 3 23 147 167 145 167 0.94 2 14 0.0024 0.16 13.2 2.8 1 23 275 297 275 297 0.99 3 14 0.0002 0.014 16.5 0.9 1 23 303 326 303 326 0.96 4 14 0.02 1.3 10.3 4.8 1 23 331 354 331 354 0.94 5 14 3.4e-07 2.4e-05 25.2 0.6 2 23 513 534 512 534 0.98 6 14 0.00068 0.047 14.9 2.7 1 23 540 562 540 562 0.98 7 14 0.87 60 5.1 5.6 1 21 629 649 629 651 0.92 8 14 0.0017 0.12 13.6 1.8 1 23 686 708 686 708 0.95 9 14 0.00024 0.017 16.3 1.8 1 23 714 736 714 736 0.97 10 14 0.011 0.75 11.1 4.1 1 23 745 767 745 767 0.98 11 14 0.00017 0.012 16.8 0.6 2 23 814 835 814 835 0.97 12 14 0.08 5.5 8.4 5.3 1 23 852 874 852 874 0.95 13 14 1.9e-06 0.00013 22.9 0.5 1 23 880 902 880 902 0.98 14 14 7e-07 4.8e-05 24.3 3.1 1 23 908 931 908 931 0.98
Sequence Information
- Coding Sequence
- ATGAATGGACAGATGCCTCCAGACATTGATCCACTCAGCACATACAATTTGAACAACTATCCCAATTTGGAAAATTATGGAACCACATTGATGCCATACGGTAGCGCGTACCAATATTCAGTTAAAGTGGAAAACTATCCCAACCCCAGTTACTACCTACCACAGCAAGCGAGCCAACAGAAACCCTCACAAGACATAGTCAGTGATAACTCTAGTTTAAGTAATGTAAGTAATGTAGGTAATGCAACATCACAGCTCATATCTGACATACAAACACAAATTGCAAACACTGAACAGAACATCACAACCCAGACTAATACCGAAGAGGAGGACATTAAACCCGACATCACaagtaatgttataaaaaagaaaattaaaaaggaaaggAGTAAATACTTCTCAGAGAAAATTACAGAAAAAGATTTCAAGTTCTACGGCTGCGCCGTGTGCAATATTAACTTCAAGGAATTGCAAGAACTAGACAACCATGTCGTTGTACATAAAGATAGGATAACTAGTTACGATTTAAGGATCAAGAATCAGattaagaagaagaaaatgaaGAAGGAGCTGAAGAAGATTAAGAAGATGAAGAAGAATGTTAAAGAAGAACCTGAATTGTCAATTGAAATTAAACCTGAAGACGGATATATAGGTAACGAGAAAGCATCAGACTTTGTGAACACAGAGTCGGACAACCAGAGCTCAAAGGAGAACAACGGAGATAAAACCAAGAACACAGAAGTTACCAAGAGCACAGATGCTGCCCAGGACCCTACCGCACAGGCCAACAAGCAGGACCTGCTGAACAGGCAGAAGATATACAAGTGCTTCGCTTGTCAGAAGCAGTTCACACTCAGCTACTACTTGAAGTTACATGTTAGATCACACACAGACGAGAAACCCTACACATGTGCACAATGCGGGCAAACGTTCATCACAGCGAGCAAGCTGGGGCGCCACAACAAGAGGTTCCACCTCGCCATACGCTACCAGTGCAGGATATGCTACAAATACTTCTCTAGGTTTGAATTCCTCACGCGACATTTTGACAAAAAGCACCCTGACGACAAGCTAGAAGGAGAACCATATGaTTTCAATGCAATACTGCCGTACTTAAAAGAGTTAGAGGAACAATTAAAAGAGAAAACAGAGAAAGAGAAAGCAGCACCAAAACCTGACGACCTCTGGTTCAACTGGGAACCAAACCAAGCCAAGGATGAACCCAACGAGGTCAAACAAGAAACCAAAGAGAACATGGAGGAGTTTAAACCAGTGGAGCCAATAACAGTCACCATTGAAGAAGTGAAGGTTGATATGGACGAAGTAGACGTCAAGATTGAAGCGATCGATGAAAAGGACGGTGGAGATATACACGATGGTGACGATGACCTTGATGTTAAAGACGAAAGCGATCACGATATGAAAGATGAAAATTTGTCAGACGATGACTATTTCCCTTCCAACACTTGGGCATCATCGCCCAAGATCCAGGAGCCGGCGTCACCCAAGAAGCTGCGGTCAGAAGACCGCGTGAAGTGCCCGGTGTGCGAGAAGCGGTTCAGCACGGCGTCGTACATGCGCATCCACATGCGCACGCACACCGGCGAGAAGCCCTTCAAGTGCTACATCTGCAACATGGGCTTCATCACCTCCAGCAAGATGCACCGCCACGTGCTCACCCACCCGGAGTCCTGGGCAGATGATGACGTAAAAGAAGAAAAGGGAGAGAAAGGAAAAATAGATATCAAAACAGAAGATGGGAAGGACGTTGAAGAGGACAAGAAAGCCAAGAAGAAGTTGAGGATGAAGAAGGCACTGGCGAAGTTCTCCAAGAAGGCGCGGCCTTCTGAGAAGAAGAAGCGTCTCTACCAGAAGCGGCCGCACGCGTGCGAGTACTGCCAGAAGAGGTTTTTGCATCCCGAGACCTTGCAGGTGCACAAGAAATGTCACGAAGGTGAGAGCGTAGTGTACAAGTGCAACTTCTGCCTCGTGGAGCACCCGGACGAAGCCTCGCAGAAGGCGCACGAGGCCTCGCACCAGGGCCCCAAGCCCTACCTGTGCACCATATGTGGTCGCAGTTACAAGAAGCGTGAGACGATGATCTACCACCGCAAGAACCATCGGCCGGACCGCGAGTACATCTGCGACATCTGCACCAAGAGCTTCAACGCGCAGTGCAAGCTGCAGCGGCACATCGTCAGTCATCGCACGCAGCGGTTCGTGCTGCGCTACGAGTGTCCGGTGTGCGCGCACATGTTCCACACCAAGTACCACGTGCAGATGCATCTCGCCACGCACCAGAAGGAGGGGCTCATCCAGGAGGAGAACCGCAACGAGATCCTAGCCATGGTGCTGCAGAACGCGCGCAAGTTCCCCAAGAGCGCCgacgcgcccgccgcgctcgcCGACCTGGCGCCCGCCGACGAGCGCAGCCGGGTCTGCAACATATGTGGCGAGGTATTCCAACACTTTTACTATTTGGAGGAGCATCTCAAGAGCCACGGATCCAAAATAGCGATAGAAGACAGCGAGAAGGCAGAAGAGAAGAAGCACATATGCAGCGTCTGCAACAAGGGCTTCAAGCTGCACTACTACCTCAAGCTGCACAGCTTCACGCACACCAAGGAGAAGCCGTTCATCTGCCAGCAGTGCGGCAAGGGCTTCATCACTCGAGGGAAACTCAAGAGACACATAGAGACACACACGGGGCTCAAGAAGTACCAGTGCCACATCTGCTACAAGTTCTTCACCAGACCCAGCTACCTCCGGATCCACGTGCGGACCATCCACGGCACTCAAGACTATAACTTCAGGGTACAGGAGAAGAATTGGAACCAGTTCGGGGCGGAGTACAGTGCGTAG
- Protein Sequence
- MNGQMPPDIDPLSTYNLNNYPNLENYGTTLMPYGSAYQYSVKVENYPNPSYYLPQQASQQKPSQDIVSDNSSLSNVSNVGNATSQLISDIQTQIANTEQNITTQTNTEEEDIKPDITSNVIKKKIKKERSKYFSEKITEKDFKFYGCAVCNINFKELQELDNHVVVHKDRITSYDLRIKNQIKKKKMKKELKKIKKMKKNVKEEPELSIEIKPEDGYIGNEKASDFVNTESDNQSSKENNGDKTKNTEVTKSTDAAQDPTAQANKQDLLNRQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAQCGQTFITASKLGRHNKRFHLAIRYQCRICYKYFSRFEFLTRHFDKKHPDDKLEGEPYDFNAILPYLKELEEQLKEKTEKEKAAPKPDDLWFNWEPNQAKDEPNEVKQETKENMEEFKPVEPITVTIEEVKVDMDEVDVKIEAIDEKDGGDIHDGDDDLDVKDESDHDMKDENLSDDDYFPSNTWASSPKIQEPASPKKLRSEDRVKCPVCEKRFSTASYMRIHMRTHTGEKPFKCYICNMGFITSSKMHRHVLTHPESWADDDVKEEKGEKGKIDIKTEDGKDVEEDKKAKKKLRMKKALAKFSKKARPSEKKKRLYQKRPHACEYCQKRFLHPETLQVHKKCHEGESVVYKCNFCLVEHPDEASQKAHEASHQGPKPYLCTICGRSYKKRETMIYHRKNHRPDREYICDICTKSFNAQCKLQRHIVSHRTQRFVLRYECPVCAHMFHTKYHVQMHLATHQKEGLIQEENRNEILAMVLQNARKFPKSADAPAALADLAPADERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDSEKAEEKKHICSVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHIETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRVQEKNWNQFGAEYSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205394;
- 90% Identity
- -
- 80% Identity
- -