Mmin024327.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000080.1:1742661-1755530[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.004 0.27 12.5 0.1 2 22 18 38 18 42 0.94 2 13 1.2 83 4.6 5.0 2 23 71 92 70 93 0.94 3 13 0.003 0.21 12.8 1.9 3 23 110 130 108 130 0.97 4 13 3.4e-06 0.00023 22.1 2.1 2 23 137 158 136 158 0.97 5 13 0.00042 0.029 15.5 0.5 1 20 165 184 165 184 0.95 6 13 0.00035 0.024 15.8 0.7 5 23 213 231 212 231 0.96 7 13 0.00042 0.029 15.5 0.5 1 20 238 257 238 257 0.95 8 13 0.011 0.75 11.1 0.5 5 23 286 304 285 304 0.96 9 13 0.00042 0.029 15.5 0.5 1 20 311 330 311 330 0.95 10 13 0.00035 0.024 15.8 0.7 5 23 359 377 358 377 0.96 11 13 0.00042 0.029 15.5 0.5 1 20 384 403 384 403 0.95 12 13 0.00035 0.024 15.8 0.7 5 23 432 450 431 450 0.96 13 13 0.00045 0.031 15.4 2.1 1 23 477 500 477 500 0.96
Sequence Information
- Coding Sequence
- ATGCAGAAGAAGCACCAGTTCGATGATATACAGTCGGAGCCGTCTGGTCCTCAGTGCGTGGAGTGCAACATCCGCTTCGCATCGGAAACTGCTTACGAGCAGCACATGAGGGTGTCTCCCAAACACGCGCCGGCAGATAACCTGGAACGCAATGAGCCTAGATGGCACAAACCCAAAGGTCCGCCGCGGAGGAAGGGAGAGCTCACTGTCACTTGCGAGgagTGCGGCATGAAGTTGAAGGGATTCAAACACTACACGTATCACTTCAAGAGACACCACAGAGACAAGATCCGCACCCAGTTCGCGAACGCCCACGAGCGCTGTTTGTGCGAGCTTTGTGGGCGCGTGCTCCAGCACACCAGCGCCCTCAAAAGTCACATGCTGGTCCACACAGGCAAGAAGGAGATTCAGTGCACAATTTGCGACAAGAGATTCTACCACCAGCGGCAGCTGACTATGCACATGGAGATTCACAGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTTACCAGCAAGTCCAACAAGAACAGGCACCTGTGGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTCACCAGCAAGTCCAACAAGAACAGACATCTGTGGGTGAGTGTGACAAGAGGTTCTACCACCAGCGGCAGCTGACTATGCACATGGAGATTCACAGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTCACCAGCAAGTCCAACAAGAACAGGCATCTGTGGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTCACCAGCAAGTCCAACAAGAACAGGCATCTGTGGGTGAGTGTGACAAGAGGTTGTACCACCAGCGGCAGCTGACTATGCACATGGAGATTCACAGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTCACCAGCAAGTCCAACAAGAACAGGCATCTGTGGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTCACCAGCAAGTCCAACAAGAACAGGCATCTGTGGGTGAGTGTGACAAGAGGTTCTACCACCAGCGGCAGCTGACTATGCACATGGAGATTCACAGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTCACCAGCAAGTCCAACAAGAACAGGCATCTGTGGCGAGCCGAAGCGCACCTTCGACTGCCCCGTGTGCGCCAGGAGCTTCACCAGCAAGTCCAACAAGAACAGGCATCTGTGGGTGAGTGTGACAAGAGGTTCTACCACCAGCGGCAGCTGACTATGCACATGGAGATTCACAGCGAGCCGAAGCAGAACTTTGCTAGCAAGTTCCTCAGCAACAGGCGTCTGTGGACCCACACGCAAGTATCAAGACCGTTCAAATGCCACGCGTGCCCCAAGTCCTTCGTGTACCCGTCGGAGAGGAAGATCCACATCAACCACGCGCACGCCAACCAGCCTTACCCCAAGAAGAGCAAGAACAGAGTGAGGAACAGCCGCCCCAGGCACATGAAGGAGGCTGTGTATGGACAGATCAGCGCCGAGCCCGCGTACTCCGGCGAGCACGGGGTGATGCTTACCGAGTGA
- Protein Sequence
- MQKKHQFDDIQSEPSGPQCVECNIRFASETAYEQHMRVSPKHAPADNLERNEPRWHKPKGPPRRKGELTVTCEECGMKLKGFKHYTYHFKRHHRDKIRTQFANAHERCLCELCGRVLQHTSALKSHMLVHTGKKEIQCTICDKRFYHQRQLTMHMEIHSEPKRTFDCPVCARSFTSKSNKNRHLWRAEAHLRLPRVRQELHQQVQQEQTSVGECDKRFYHQRQLTMHMEIHSEPKRTFDCPVCARSFTSKSNKNRHLWRAEAHLRLPRVRQELHQQVQQEQASVGECDKRLYHQRQLTMHMEIHSEPKRTFDCPVCARSFTSKSNKNRHLWRAEAHLRLPRVRQELHQQVQQEQASVGECDKRFYHQRQLTMHMEIHSEPKRTFDCPVCARSFTSKSNKNRHLWRAEAHLRLPRVRQELHQQVQQEQASVGECDKRFYHQRQLTMHMEIHSEPKQNFASKFLSNRRLWTHTQVSRPFKCHACPKSFVYPSERKIHINHAHANQPYPKKSKNRVRNSRPRHMKEAVYGQISAEPAYSGEHGVMLTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -