Mmin025931.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000283.1:236996-265731[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0019 0.13 13.5 1.4 1 23 240 262 240 262 0.97 2 15 0.035 2.4 9.5 0.2 2 19 270 287 269 292 0.90 3 15 1.1e-05 0.00077 20.5 0.9 1 23 323 346 323 346 0.98 4 15 0.00066 0.045 14.9 3.7 1 23 352 375 352 375 0.96 5 15 0.039 2.7 9.3 0.3 2 21 393 412 392 417 0.92 6 15 0.032 2.2 9.6 0.5 2 23 428 448 427 448 0.95 7 15 5.8e-06 0.0004 21.4 1.8 2 23 470 492 469 492 0.96 8 15 0.00014 0.0099 17.0 2.3 2 23 502 523 501 523 0.96 9 15 0.0017 0.11 13.6 0.7 1 23 529 551 529 551 0.97 10 15 0.0011 0.072 14.3 0.1 1 20 557 576 557 578 0.93 11 15 2 1.4e+02 3.9 0.9 9 23 598 612 596 612 0.94 12 15 0.0011 0.072 14.3 0.1 1 20 618 637 618 639 0.93 13 15 2 1.4e+02 3.9 0.9 9 23 659 673 657 673 0.94 14 15 0.00013 0.0088 17.2 0.2 1 23 679 701 679 701 0.97 15 15 2e-06 0.00014 22.8 2.9 1 23 707 730 707 730 0.98
Sequence Information
- Coding Sequence
- ATGTTCGCAGGCGTGCACATGAATGACTTTTTTGCCATAATGCGCAAAAAAGCAACATCCCTCGTGCAGCGATCACGCAATAGCAGCAACAGCATTCTAAGGttaaATACAGTACCAGAACTACAACATGTATGCTTCATATGTTACGCAAGACTGAGACACTGTGAGAGGTTGATACAACAAGCCGAAACAACGGAGAAACTGCTGAAAGATACCGTCAATGTTGCACAGCTCCGCAATCTAGCCAAAAACCGACAATGTGTATTAAAGATATCCTCTACAGTCAAGATAGATGTTGAACCCAGTGTCATAGAAGCTAAAGAAGAGGAGAAAGAACAATATCTTAAAGTAGAAGACATAAAGCATGAAACTGACTTAGATATATTAGCACAAGatgcAAATGAAGATTCAGAAACTGAGTTAAATAGATCAGATGTTGAAagtaaaatagataaattatcaACTGATTCGGAGGATGACATTCCGCTAAGAAGTATACGGACAAGAGTGACCAAGAAAGTCAAAATAGACAAGGACAGAAGTAAGAAGGTTAAGCAGAGTAAAGATGTAAAGCTAGCTAGAAGCCAAAgagctacctacctacctacacctAGATTTCCAGTAAAGCTTGAAGCCAAAGAGCTACACCTAGACGAGAAGCAGCAGATGGAAGAGTTGATGGAGCGCTCCAAGTCGCTCAACTACCTCAACTCCCCGTACAAATGTGATCTGTGCTACCGAGGGTTCAGAGACCCCACCGCGTATAGCAAGCATAAGGACAAACATGATCTGAAAAGCGGTCACCTAGAGTGCAAGATCTGCCGCCTGCGCTACAGCAGCAGGCAGGCGCTCAACTCGCACAGCGTGGCGGCGCACTCCAGGCGGTTCAGCTGCACCAGCTGCCCGCACGTCAGTCTCACCAAGAACCAAGCCGTGGTCCACGAGCGGTGGCACAACGGACACCAGTACCCGTGCAAGCTCTGCGACAAAAGAttcatCAAACCCACCAGCTATCTCTCCCATATGCGTAAGGCGCACTGCAATTTGAGCCAACACGTGTGCCACAAGTGTGGGGAGAGCTTCGCGGGCAGACATGGACTGTTAATGCATATGAGCAAGACCCACAGACACGATGACACGCAATCAGAAGTGGTGGCTGATCCCACTTCTGAGAGCTACTGCAAGGAGTGCGGGATCCAGTTCCAGACTCTGGACGCGTACAACCTCCACTTGCTGTCTTCTCAGAAGCATAAGCAGGCGGTCTGGAAAGATAATGGGTCAAAATGCAGTATATGTGACAAGTCAGTAAGTCAGTTCGATCGCGAGAGACACGCACGCGTGCACGCCAGGGAGCTGAAGCCGCGCGTCGCGCACGTGGCCGACGCCGCGCCGCCCACCGTGCAGATGCCTTGCTCACAGtgcaGCAAGACGTTCACGAGTCGGTCCAAACTGCAGATGCACATACGGCGCATGCACCTAGGGCAGCGCTACAACAGGAACGTGGTGTGCGAAGTGTGCGGGAAGCACTGCACGTCTAACGCTACGTTGCGCTATCACCAACGCGCTCACACCGGGGAGCGACCGTACGCCTGTGCTCTGTGCACGGCTCGCTTCGTGTCTCGCGAGCACTGGCGATTGCACCAGCGTGTGCACTCGGGAGAACGACCGTATGCTTGTGCACTGTGCGGACACCGCTTTGCACAGAAGCCTGCTCTCAACAGACACTATATAGTGAGTATATACTGCAATGTGCACGCCCTTTGGTCTAAGGCTAGTTGCTCGTACACCGCTCGCTTCGTGTCTCGCGAGCACTGGCGATTGCACCAGCGTGTCCACTCGGGAGAACGACCGTATGCTTGTGCACTGTGCGGACACCGCTTTGCACAGAAGCCTGCTCTCAACAGACACTATATAGTGAGTATATACTGCAATGTGCACGCCCTTTGGTCTAAGGCTAGTTGCTCGTACACCGCTCGCTTCGTGTCTCGCGAGCACTGGCGATTGCACCAGCGTGTCCACTCGGGAGAACGACCGTATGCTTGTGCACTGTGCGGACACCGCTTTGCACAGAAGCCTGCTCTCAACAGACACTATATAGTGCACACGGGAGCGAAGCCCTACGAATGCCACCTCTGCAACAAGACGTTCACTCAATCCGCCTCCATGAAGAAGCACATACAGCGCGTGCACTTGCGACAGCCGCACTGCAGGAACAAAGATGGCGACGACAAGGAGAAGAGTTTACCAGTTGacgttaattaa
- Protein Sequence
- MFAGVHMNDFFAIMRKKATSLVQRSRNSSNSILRLNTVPELQHVCFICYARLRHCERLIQQAETTEKLLKDTVNVAQLRNLAKNRQCVLKISSTVKIDVEPSVIEAKEEEKEQYLKVEDIKHETDLDILAQDANEDSETELNRSDVESKIDKLSTDSEDDIPLRSIRTRVTKKVKIDKDRSKKVKQSKDVKLARSQRATYLPTPRFPVKLEAKELHLDEKQQMEELMERSKSLNYLNSPYKCDLCYRGFRDPTAYSKHKDKHDLKSGHLECKICRLRYSSRQALNSHSVAAHSRRFSCTSCPHVSLTKNQAVVHERWHNGHQYPCKLCDKRFIKPTSYLSHMRKAHCNLSQHVCHKCGESFAGRHGLLMHMSKTHRHDDTQSEVVADPTSESYCKECGIQFQTLDAYNLHLLSSQKHKQAVWKDNGSKCSICDKSVSQFDRERHARVHARELKPRVAHVADAAPPTVQMPCSQCSKTFTSRSKLQMHIRRMHLGQRYNRNVVCEVCGKHCTSNATLRYHQRAHTGERPYACALCTARFVSREHWRLHQRVHSGERPYACALCGHRFAQKPALNRHYIVSIYCNVHALWSKASCSYTARFVSREHWRLHQRVHSGERPYACALCGHRFAQKPALNRHYIVSIYCNVHALWSKASCSYTARFVSREHWRLHQRVHSGERPYACALCGHRFAQKPALNRHYIVHTGAKPYECHLCNKTFTQSASMKKHIQRVHLRQPHCRNKDGDDKEKSLPVDVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -