Mmin025850.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000276.1:285570-293095[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8.1e-06 0.00056 20.9 1.5 2 23 55 76 54 76 0.97 2 22 8e-05 0.0055 17.8 1.7 1 23 82 104 82 104 0.97 3 22 3.9 2.7e+02 3.0 0.2 14 23 114 123 112 123 0.91 4 22 8e-05 0.0055 17.8 1.7 1 23 129 151 129 151 0.97 5 22 3.9 2.7e+02 3.0 0.2 14 23 161 170 159 170 0.91 6 22 8e-05 0.0055 17.8 1.7 1 23 176 198 176 198 0.97 7 22 8e-05 0.0055 17.8 1.7 1 23 223 245 223 245 0.97 8 22 8e-05 0.0055 17.8 1.7 1 23 270 292 270 292 0.97 9 22 3.9 2.7e+02 3.0 0.2 14 23 302 311 300 311 0.91 10 22 8e-05 0.0055 17.8 1.7 1 23 317 339 317 339 0.97 11 22 8e-05 0.0055 17.8 1.7 1 23 364 386 364 386 0.97 12 22 0.00037 0.025 15.7 1.3 1 23 411 433 411 433 0.95 13 22 3.9 2.7e+02 3.0 0.2 14 23 443 452 441 452 0.91 14 22 8e-05 0.0055 17.8 1.7 1 23 458 480 458 480 0.97 15 22 3.9 2.7e+02 3.0 0.2 14 23 490 499 488 499 0.91 16 22 8e-05 0.0055 17.8 1.7 1 23 505 527 505 527 0.97 17 22 0.00013 0.0088 17.1 0.7 1 23 545 567 545 567 0.96 18 22 6.4 4.4e+02 2.4 0.3 15 23 578 586 575 586 0.90 19 22 8e-05 0.0055 17.8 1.7 1 23 592 614 592 614 0.97 20 22 5.8e-05 0.004 18.2 0.6 1 23 620 642 620 642 0.97 21 22 4.3e-05 0.003 18.6 2.7 1 23 648 670 648 670 0.98 22 22 0.69 48 5.4 7.4 1 23 676 698 676 698 0.97
Sequence Information
- Coding Sequence
- ATGGTTGCAGAACCAGCAATGGATGCATCTGTAGCACTGGCCGGCCAGCCGGTGGAGGAGATAGTCATCAAATGTGAGGTCATAGAGATATCTGATGATGAGCCAGACTCAGAAGAACCAAAAAAGAAGCGTCGTAAACGCGTCACGCCCAAATCCCCGCAGTCTTGTGAGGAATGTGGCAAGACATTCCAGACGGGCTACGAGCTGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGCTACGAGCTGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGCTACGAGCTGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGTTACAAACAGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGTTACAAACAGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGCTACGAGCTGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGTTACAAACAGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGTTACAAACAGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGTCGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATTACATAAGGACATTAGTTCACATCAGACGGGCTACGAGCTGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGCTACGAGCTGAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGGCTATAAACTAAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTTACCTCAGTATACATAGCTTATCACATAAGGACATTAGTTCACATCAGACGGGCTACAAACTAAAGAAGCACAAGCGCACGCACACGGGCGAGCGGCCTTACATGTGCACGACGTGCGGGAAGACGTACACGCAGCTCGGTCACCTCAGTATACATAGCTTATCACATAAGGGTATAAAAAACTTCAACTGCAACGAGTGCGGTTCGTCGTTCTACCGGAAGGCGGACTTGGACCGGCACGAGAAGATCCACACGGGCGAGAAGCCGCACCAGTGCGACATCTGCGCCAAGAGCTTCACACAGAAGAACAATCTGGTGATGCACTTCAAGATGCATCTGGGAGACAAGCCTCACCAGTGCCAAGTCTGTCATAAGAGGTTCCTCACAAGAAGCAAGATGATGCTCCATTCGAAGAAACATGACAAGGAGAGGAAGAAAAAAGATATACTTGGACACATTTAG
- Protein Sequence
- MVAEPAMDASVALAGQPVEEIVIKCEVIEISDDEPDSEEPKKKRRKRVTPKSPQSCEECGKTFQTGYELKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYELKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYELKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYKQKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYKQKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYELKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYKQKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYKQKKHKRTHTGERPYMCTSCGKTYTQLGHLSIHSLLHKDISSHQTGYELKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKDISSHQTGYELKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKGYKLKKHKRTHTGERPYMCTTCGKTYTQLGYLSIHSLSHKDISSHQTGYKLKKHKRTHTGERPYMCTTCGKTYTQLGHLSIHSLSHKGIKNFNCNECGSSFYRKADLDRHEKIHTGEKPHQCDICAKSFTQKNNLVMHFKMHLGDKPHQCQVCHKRFLTRSKMMLHSKKHDKERKKKDILGHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -