Mmin024677.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000166.1:32892-60538[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0053 0.37 12.1 0.8 1 23 290 312 290 312 0.98 2 21 0.016 1.1 10.5 1.5 1 23 319 341 319 341 0.95 3 21 6.7 4.6e+02 2.3 1.6 1 9 345 353 345 368 0.59 4 21 0.00086 0.059 14.5 3.1 1 23 375 397 375 397 0.98 5 21 2.4e-05 0.0017 19.4 3.4 2 23 403 424 402 424 0.97 6 21 0.00022 0.015 16.4 0.5 1 23 430 453 430 453 0.96 7 21 2.2 1.5e+02 3.8 0.2 1 12 458 469 458 470 0.92 8 21 0.0014 0.097 13.9 0.1 2 23 470 492 469 492 0.95 9 21 2.2 1.5e+02 3.8 0.2 1 12 497 508 497 509 0.92 10 21 0.0014 0.097 13.9 0.1 2 23 509 531 508 531 0.95 11 21 2.2 1.5e+02 3.8 0.2 1 12 536 547 536 548 0.92 12 21 0.0014 0.097 13.9 0.1 2 23 548 570 547 570 0.95 13 21 2.2 1.5e+02 3.8 0.2 1 12 575 586 575 587 0.92 14 21 0.0014 0.097 13.9 0.1 2 23 587 609 586 609 0.95 15 21 2.2 1.5e+02 3.8 0.2 1 12 614 625 614 626 0.92 16 21 0.0014 0.097 13.9 0.1 2 23 626 648 625 648 0.95 17 21 0.00033 0.023 15.9 0.9 1 22 653 674 653 678 0.93 18 21 0.00038 0.026 15.7 0.5 1 23 686 709 686 709 0.93 19 21 0.0013 0.088 14.0 0.1 2 23 716 738 716 738 0.96 20 21 1.1e-06 7.5e-05 23.7 0.3 2 23 747 768 746 768 0.97 21 21 0.034 2.3 9.5 0.2 5 23 777 795 774 796 0.92
Sequence Information
- Coding Sequence
- ATGTGCCAAACATGTCTCGGAGTTGGAATCAATATAAATCCCATGTCTTTCGAAGATATGGAGTTTTATAGGTTGTTTATTCCAAagCTGGAAGATCCCTTAGATGTGCTGTGCATCTGCGTTTATTGCAAAGGTATTATCAGAAAACTGAGGGGATTCATCGCGCAATCAAGACTTGCATATGAAATACTTAAGAATTCCATTAACAggagcaCAGACACACTGCAACAAGTGAACTCAAACCAGTTGTCAAAATCTGAAACTGTTTGTCTGTACATCGGACCAGAAACACCATTACTATTGGATAAAGACATCAAGAAGTGTGATGATGAGATGGATGATGACATGCCATTGATGATGCTGAGTCAACATGATGACTATCAACAATATGACAATGATGTACAATTGAGCGCAGAAATACTTCAGAAAGTGAGAATCAACCAGCTGATAAGATCTGaaactgtctgtctgtacgtCGGGCCAGAAACACATTTACTATCGGACAGTGACATTAAAAAGTGTGACGATGACTCCGATGATGACATGCCGTTGCTGATGCTGAGGAGAGGCAATGATGACTATCATCAATACGACAGTGATGTGCAATCGgATAATGTACAAATAAACATAGATAAGATTAAGCAAGAAGAATCTGTACATACTGATAGTAGCATAAAAGAAGTAGAAACTACACAGACAGAGAGAAGAATTAAGAAGAAAGTAAAGAAAGAGAAAGAAGTTGGAGAAGGTTTCTCTTCTAGAATGGTCACGGAGACTGAcgaatataaagttataaaacttACAAAGGAAGagATATTAGAGGAGATGAGGCAACACTCACAAACTGACAAGTACAAGGTGTTGCCATATAAATGCGAAAACTGCGTGCGCGCATTCAACTTCGAAGATGTTTATCAAACACACATGGAAAAACATTCCCCTaaaaacggTGACTTCTTGTGTGATATATGCAGCCAATACTGTCCGAGCAGAGTATCACTGAGGGGCCACATGAAGTCACATTCCACCAGATACAAATGCAAGTTGTGCGGTCTAGTCCGGTTGTCCAGACAGCATATATTGGAGCATCACTCGTTGCAGCACACGGGTTCGCCCGCGCTATACAAGTGCCCTAAATGCGACCACACCACTAACAAACGTACGGCGATGCAGCGGCACGTGAGGCTGCACTCGGGCGAACCGCTGCGATGTCACCGATGCGGCAAGTTCTACAAGAGTAAGGAGTCCTTGAGGATCCATATCATGAGACACGACGACAGAAAGCTACACCAGTGTGAAGTGTGCTCGAGCACGTTCATATACGCCGCGCAGCTGAGCAAGCATATGCGCGCCGTGCACGAGCTGAGAGACTACTACTGCGTCGAGTGCGACATCATGTTCAGGTCCATGTGTCAAGTGTGCTCGAGCACGTTCATATACGCCGCGCAGCTGAGCAAGCATATGCGCGCCGTGCACGAGCTGAGAGACTACTACTGCGTCGAGTGCGACATCATGTTCAGGTCCATGTGTCAAGTGTGCTCGAGCACGTTCATATACGCCGCGCAGCTGAGCAAGCATATGCGCGCCGTGCACGAGCTGAGAGACTACTACTGCGTCGAGTGCGACATCATGTTCAGGTCCATGTGTCAAGTGTGCTCGAGCACGTTCATATACGCCGCGCAGCTGAGCAAGCATATGCGCGCCGTGCACGAGCTGAGAGACTACTACTGCGTCGAGTGCGACATCATGTTCAGGTCCATGTGTCAAGTGTGCTCGAGCACGTTCATATACGCCGCGCAGCTGAGCAAGCATATGCGCGCCGTGCACGAGCTGAGAGACTACTACTGCGTCGAGTGCGACATCATGTTCAGGTCCATGTGTCAAGTGTGCTCGAGCACGTTCATATACGCCGCGCAGCTGAGCAAGCATATGCGCGCCGTGCACGAGCTGAGAGACTACTACTGCGTCGAGTGCGACATCATGTTCAGGTCCACGAACAACCTAAAACAACACTTGCAGCGAGCAAAGCGTCATAGAGATGTTGCCTCTTACAAATTTCAATGTCAGCAATGCGACCAGAAGTTCATATCGGCGTCAACACTAGCGACTCACAGCACCAGCGCGCACGGCGCCGCGCGGAGCGAGACCTGCGACGCGTGCCCGCGCGCCTACAGCAGCGCGGAGGCGCTCCGCTGGCACACGCGCCGGGCGCACGGCGCGCGAGAGCGAACGTCCATACCCTGCCCGCTGTGCGACCGACAGTTCTCGCGCAAGTACGTGCTCCGCGTGCACATGCGCACGCACACGGGCGAGCGGCCGCACGTGTGCGGGTGCGGCGCCGCGTTCGCGCAGCCGGCCGCGTTGAGAGCGCACCGCGCGCAGCACCACAAGGTGAGTGATCATCTCTAG
- Protein Sequence
- MCQTCLGVGININPMSFEDMEFYRLFIPKLEDPLDVLCICVYCKGIIRKLRGFIAQSRLAYEILKNSINRSTDTLQQVNSNQLSKSETVCLYIGPETPLLLDKDIKKCDDEMDDDMPLMMLSQHDDYQQYDNDVQLSAEILQKVRINQLIRSETVCLYVGPETHLLSDSDIKKCDDDSDDDMPLLMLRRGNDDYHQYDSDVQSDNVQINIDKIKQEESVHTDSSIKEVETTQTERRIKKKVKKEKEVGEGFSSRMVTETDEYKVIKLTKEEILEEMRQHSQTDKYKVLPYKCENCVRAFNFEDVYQTHMEKHSPKNGDFLCDICSQYCPSRVSLRGHMKSHSTRYKCKLCGLVRLSRQHILEHHSLQHTGSPALYKCPKCDHTTNKRTAMQRHVRLHSGEPLRCHRCGKFYKSKESLRIHIMRHDDRKLHQCEVCSSTFIYAAQLSKHMRAVHELRDYYCVECDIMFRSMCQVCSSTFIYAAQLSKHMRAVHELRDYYCVECDIMFRSMCQVCSSTFIYAAQLSKHMRAVHELRDYYCVECDIMFRSMCQVCSSTFIYAAQLSKHMRAVHELRDYYCVECDIMFRSMCQVCSSTFIYAAQLSKHMRAVHELRDYYCVECDIMFRSMCQVCSSTFIYAAQLSKHMRAVHELRDYYCVECDIMFRSTNNLKQHLQRAKRHRDVASYKFQCQQCDQKFISASTLATHSTSAHGAARSETCDACPRAYSSAEALRWHTRRAHGARERTSIPCPLCDRQFSRKYVLRVHMRTHTGERPHVCGCGAAFAQPAALRAHRAQHHKVSDHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -