Mmin017866.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mycalesis mineus
Gene Symbol
-
Assembly
GCA_034621355.1
Location
CM067899.1:5926267-5938466[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0001 0.0071 17.4 0.1 3 23 28 48 27 48 0.97
2 17 9.3e-07 6.4e-05 23.9 1.2 1 23 54 76 54 76 0.99
3 17 5.8e-06 0.0004 21.4 2.7 1 23 82 104 82 104 0.99
4 17 3.8e-06 0.00026 21.9 2.6 1 23 119 141 119 141 0.98
5 17 5.3e-05 0.0037 18.4 3.1 1 23 156 178 156 178 0.98
6 17 3.7e-07 2.5e-05 25.1 1.5 1 23 193 215 193 215 0.99
7 17 4.5e-05 0.0031 18.6 0.1 1 23 222 244 222 244 0.99
8 17 1.2e-05 0.0008 20.4 2.1 1 23 250 272 250 272 0.99
9 17 0.037 2.6 9.4 1.8 1 23 279 301 279 301 0.98
10 17 6.2e-07 4.3e-05 24.4 2.3 1 23 307 329 307 329 0.99
11 17 0.043 3 9.2 1.8 1 23 336 358 336 358 0.98
12 17 2.5e-06 0.00018 22.5 1.5 1 23 364 386 364 386 0.99
13 17 0.00048 0.033 15.3 0.7 1 23 393 415 393 415 0.99
14 17 2.8e-06 0.00019 22.4 1.9 1 23 421 443 421 443 0.98
15 17 0.0021 0.14 13.3 0.3 1 20 449 468 449 471 0.93
16 17 0.0001 0.0072 17.4 0.8 2 23 478 499 477 499 0.96
17 17 3.6e-06 0.00025 22.0 1.4 1 23 505 528 505 528 0.97

Sequence Information

Coding Sequence
ATGGGAGTGGACATGGGCTCAGTACAAACTAAAATGGAAGTCTCAAATGGACAAGGCATACCGCGATCAAAGCCACAAGCATGTAAGGTTTGCGGCAAGGTGTTGTCCTCAGCCTCGTCGTATTACGTACACATGAAGCTACATTCAGGAAATAAACCCTTCCAGTGCACGGTTTGCGACGCAGCGTTCTGCCGCAAGCCGTACCTCGAGGTGCACATGCGCACGCACACCGGCGAGCGCCCGTTCCAGTGCGACCTGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCTCTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACCGTGCAAGGGCGCCCTTACACGTGCGGGCAATGTCCCGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACTTGGAGATTCACACGCGCACTCACACCGGCGAGCGACCTTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACCTGGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTGTGCCTCAAGAGATTCGCGCAAAAGTCCACGCTGAACATTCACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATCCACATGCGCACGCACACAGGCGAGCGGCCCTTCGAGTGCGATGTGTGTTACAAACGCTTCACGCAGAAATCTACCCTCAACATCCACAAGCGAATCCACACCGGGGAACGTCCGTACGCATGTGATATTTGCCAAAAACGGTTCGCTGTGAAAAGCTACGTAACAGCGCACAGGTGGTCGCACGTAGCGGACAAGCCGCTCAACTGCGAGCGCTGCTCGATGACGTTCACGTCGAAGGCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGGCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTGCGCGACAGCTACCTCATACGACATCACAACCGCGTGCACCGCGAGAACCACAGCAACATCGTCAACAACGCCAACAACTCGAACAACGGCAACTACGACTCGCCCGGCGTTTGCGATCTCAGGTACGACTCACCCCACGTACGGAGCAGCATGGGCACCATCGGCAGCGTCAACAACGCCAACAACTCCAACAACGGCAACTACGACTCGCCCGGCGTTTGGGATCTCAGGCACGACCTACCCCACGTACGGAGCAGCATGGGCACCATCGGCAGCGTCAACAACGCCAACAACTCCAACAACGGCAACTACGACTCGCCCGGCGTTTGCGATTTCAGGCACGACCTACCTCGCGTGCGGAGCAGCATGCGGACCGTCGGAAGCATTAACAACTCCAATCCTCTCCAATAA
Protein Sequence
MGVDMGSVQTKMEVSNGQGIPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPYTCGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKAQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNIVNNANNSNNGNYDSPGVCDLRYDSPHVRSSMGTIGSVNNANNSNNGNYDSPGVWDLRHDLPHVRSSMGTIGSVNNANNSNNGNYDSPGVCDFRHDLPRVRSSMRTVGSINNSNPLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
-
80% Identity
-