Mmin024209.2
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000080.1:267589-281961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.023 1.6 10.0 1.2 1 23 41 64 41 64 0.94 2 29 0.0028 0.2 12.9 0.4 3 23 70 91 69 92 0.96 3 29 0.0028 0.2 12.9 0.4 3 23 98 119 97 120 0.96 4 29 0.0028 0.2 12.9 0.4 3 23 126 147 125 148 0.96 5 29 0.0028 0.2 12.9 0.4 3 23 154 175 153 176 0.96 6 29 0.0028 0.2 12.9 0.4 3 23 182 203 181 204 0.96 7 29 0.0028 0.2 12.9 0.4 3 23 210 231 209 232 0.96 8 29 0.0027 0.19 13.0 0.1 3 23 238 259 237 259 0.97 9 29 0.0028 0.2 12.9 0.4 3 23 287 308 286 309 0.96 10 29 0.0028 0.2 12.9 0.4 3 23 315 336 314 337 0.96 11 29 0.0028 0.2 12.9 0.4 3 23 343 364 342 365 0.96 12 29 0.0028 0.2 12.9 0.4 3 23 371 392 370 393 0.96 13 29 0.0028 0.2 12.9 0.4 3 23 399 420 398 421 0.96 14 29 0.0028 0.2 12.9 0.4 3 23 427 448 426 449 0.96 15 29 0.0027 0.19 13.0 0.1 3 23 455 476 454 476 0.97 16 29 0.0028 0.2 12.9 0.4 3 23 504 525 503 526 0.96 17 29 0.0028 0.2 12.9 0.4 3 23 532 553 531 554 0.96 18 29 0.0028 0.2 12.9 0.4 3 23 560 581 559 582 0.96 19 29 0.0028 0.2 12.9 0.4 3 23 588 609 587 610 0.96 20 29 0.00049 0.034 15.3 0.5 3 23 616 637 615 638 0.96 21 29 0.00044 0.03 15.5 0.1 3 23 644 665 643 665 0.97 22 29 1.3 93 4.5 0.1 2 23 732 754 731 754 0.91 23 29 0.0011 0.074 14.2 0.2 3 23 765 785 764 786 0.94 24 29 0.0002 0.014 16.5 0.9 2 23 792 814 791 814 0.96 25 29 2.1 1.4e+02 3.9 0.4 2 12 835 845 834 848 0.86 26 29 2.3e-05 0.0016 19.5 0.9 2 23 868 889 867 889 0.97 27 29 4.6e-05 0.0032 18.5 1.6 1 23 895 917 895 917 0.99 28 29 1.9e-05 0.0013 19.7 3.7 1 23 923 945 923 945 0.94 29 29 1.8e-05 0.0013 19.8 1.7 1 23 951 974 951 974 0.97
Sequence Information
- Coding Sequence
- ATGCTAAATGATACGACTATTTTTTTAACGCATCCCTTCCGGAAGCAAAGCCGAAGATCGAATCTGCTTCCGAAATGTCATCGCGCAAAGGAGCACTCGAACTGGCACAACGGATTCACTTTCGACTGCAAGATATGTGGGGCCAGCTTCGCCAAGTCCACAAGCCACCTGACCCACATCCGTCTGCAGCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACGTGAGTATCATCATATTCACGATCAGCAAGTCCACTGGCCACCTGACCCACATCCGTCTGCAGCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACGTGAGTATCATCATATTCACGATCAGCAAGTCCACTGGCCACCTGACCCACATCCGTCTGCAGCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGAGGCACAAACGGAAGGCGCACCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGAGAGTTCGGCTTGAGGAGGCACAAACGGAAGGCGCACGTGAGTATCATCATATTCACGATCAGCAAGTCCACTGGCCACCTGACACCTGACCCACATCCGTCTGCAGCATCCGTCCAGCAACGCGTGCGACATCTGCGGGGAGTCCTTCATTGGATAGTTCGGCTTGAGGATGCACAAACGGAAGGCGCACGAACTCCCACGCCGCCAGAACCTCAAAGCTCGAACCCACCATCCAGCTGCGCGCAGTGCAACACCAAGTTCCTGAGTGTGGACGCTCTCGCCAGGCATCTCGACCTCGCGCACAACAATACTTGTGATGAAGACATGAGGCCGTGCCCCTACTGCGGCGAGGGGTATCCTTCCGACCAGCAGTTGAAAGAGCATCAGCAGCTTCATCACAAGGAGGAAAGCGTCAGCTGTGAGGACTGCAAGAGAAGCTTCTCGAGTTCCCGTTCGTACGCGACGCATTACCAGCGCGTGCACCTCGGCGTCAAGCTGCGCCAGAACAAGCCGCGCAGCCTCAAGCGCCCCGGGGAGAGCGTCGTCTGCGAGATATGCGGCAAGAAGTGCATTCGCGTGCACCTCGGCGTCAAGCTGCGCCAGAACAAGCCGCGCAGCCTCAAGCGCCCCGGGGAGAGCGTCGTCTGCGAGATATGCGGCAAGAAGTGCATTACGAAGGCCACCCTGACGTATCATCAGCGCATCCACACCGGCGAGAGGCCCTTCCAGTGCACCGAGTGCCCCAAGAAGTTCAGCGTCTTCCAGAGACTGCAGATCCACCTCCGCACGCATACGGGCGAGAGTCCGTACCAGTGCAAGCACTGCCCCAAGGCGTTCAAACACAAGGCGGCGCTCAATAGACACGACAGGGTGCACACGGGGGCGAAGCCCTACAGCTGCGCGCACTGCGGCAAGTCGTTCTCGCAGTCCAACAGCATGAAGCTGCACGTGAGCACCGTGCACCTCAAGCTGCCGGCGCCCTACCGCGCCCGACGCGCCAAGCTTGTGTGA
- Protein Sequence
- MLNDTTIFLTHPFRKQSRRSNLLPKCHRAKEHSNWHNGFTFDCKICGASFAKSTSHLTHIRLQHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHVSIIIFTISKSTGHLTHIRLQHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHVSIIIFTISKSTGHLTHIRLQHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRMHKRKAHHPSSNACDICGESFIGEFGLRRHKRKAHHPSSNACDICGESFIGEFGLRRHKRKAHVSIIIFTISKSTGHLTPDPHPSAASVQQRVRHLRGVLHWIVRLEDAQTEGARTPTPPEPQSSNPPSSCAQCNTKFLSVDALARHLDLAHNNTCDEDMRPCPYCGEGYPSDQQLKEHQQLHHKEESVSCEDCKRSFSSSRSYATHYQRVHLGVKLRQNKPRSLKRPGESVVCEICGKKCIRVHLGVKLRQNKPRSLKRPGESVVCEICGKKCITKATLTYHQRIHTGERPFQCTECPKKFSVFQRLQIHLRTHTGESPYQCKHCPKAFKHKAALNRHDRVHTGAKPYSCAHCGKSFSQSNSMKLHVSTVHLKLPAPYRARRAKLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -