Mnit026454.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421440.1:6824342-6836376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.92 83 4.8 0.6 1 23 309 331 309 331 0.95 2 14 0.24 21 6.6 1.8 1 20 388 407 388 409 0.95 3 14 2 1.8e+02 3.7 1.9 3 23 429 450 428 450 0.90 4 14 1.6 1.5e+02 4.0 2.0 2 22 488 508 488 508 0.93 5 14 3.4 3e+02 3.0 3.8 1 23 512 534 512 534 0.82 6 14 0.034 3 9.3 0.8 1 23 1024 1046 1024 1046 0.94 7 14 0.0061 0.55 11.6 0.9 3 19 1053 1069 1052 1072 0.93 8 14 0.92 83 4.8 0.4 1 23 1088 1109 1088 1109 0.95 9 14 0.0015 0.13 13.6 0.4 3 23 1182 1202 1181 1202 0.93 10 14 9.4e-05 0.0084 17.3 1.5 1 23 1217 1239 1217 1239 0.99 11 14 0.013 1.2 10.6 2.6 1 23 1245 1267 1245 1267 0.98 12 14 0.0027 0.24 12.8 4.8 2 23 1273 1294 1273 1294 0.98 13 14 0.17 15 7.1 0.3 1 20 1328 1347 1328 1348 0.95 14 14 0.0043 0.39 12.1 0.6 2 23 1359 1381 1358 1381 0.94
Sequence Information
- Coding Sequence
- ATGGTGAAGGTTAAAAAGAAGCAAACAAGGGAAGAGAGATTAGAAAAAAAGCGTCAAGCTGAAAAATTACGCTACCAAAGAATTAAAAACGATCCGGGTAAAAATGCTCaattgaaagaaaaagaaaaccagcaatataaaaagaaaaaagaaaagggaCAAATTAAGAGCATAAAAGATATGTCTGAAAGGGAACAAAGGGCCATAAGAAAAATATGGAGAGATAAGACTAAAAAACATAGAGATCGCGTAAAGCTACAATTTACCAGAAACAATCCAATAACACCCCCTGCGTCTGATAATGAAGACCAACCTCCACTTCCACAAAACAATATCGCTCTTGCTGCTAAAAGGCGATCAGAAATTCAGCGGAAACTACGAAATAAACTTGAAATTAAACAGTTACGTCAAAAGaaaaaagaaaaaaatctgcaagatgttattattaaaactacagAATCAGGTAAAAGAACATCAGTAGAATCATTGGAATTGGGTGTTAATGTCAAAATAGAAACATATGATGAAGACTGTCAAATTGAAGAAGTACCAActgaaataattgaattagaCGATTCTAATGATGAACACGATGACAATAGACATGATTCTAATGATAAActgaatgaaattaaagataattttaatgatgaaacaataaagattaCAGAAGatgattttaaacaaaaaacagtaaacataacattttatgaaGTAGACCCAGATATAGTTTTAAAAGATGCAAGTAGGATTAACATTGAAAATATTGCAGATCAGAAGTTGAAAATAGAAATAAGGAATTGTTGGGGACGAGTAAGACATGTGGAACATGTTAATAGTAAACATGAATCTTTAGTGCAAGCTGCTTTGGGTAAATGGGAATTATGGATCGTAGACAATATACACAGAAATACACCTTTAATGTACAAATGTTATATATGCAATCTAGCATGGTGGGACTTGCATAATTTCAACGAGCACATACGAATACACAACGAAGGTCTAAATGTAGACTTAGAAACGGTGTACCATGAATGTAACATTATCGCTTTTAAAGGCTCAAAACCCGCCTCATCAGAAATTAAAATCCACGACAGATGTAGAAAATGTGGCTGTAAATCTGAGTTTCATTCGCTGAAGAATAGAATGACTGGTGTGTACTATAAATGTGAATCATGCAATCGAGGTTTCCAAACTTGTCTTGCGTTGTTTCAACATCAAGGCAAATGTATgttgaataaaaagaaaatgagCTACAATTGCAATCCGAAAACATTGAACAATTGTTCTATATGCAACTTACACATTGTTACACAAAAATTGTTGAAATATCACTACACTTTCTACCATCAAGTGCGGTCAGACATGCCAATCTTAAATCCTTTAGTTGACTGTTTATCATGCCCAAGAAGTTTTATATCGCTCAGTTCGCACATATGTCCTAACAGAACTTGGAGTGCGAGATGTGATTCTTGTTGCAGAAGgttCGCCTCTAAAATGGAATTGAACATCCACACAAGAAGTAACATAAGTTTTTACTGCAAGATATGTTCTAAGGTATACCAGAATAAATGCTCGGAGATCAAACACTATGTTAATCATTCAAACAATTTTGTTGTTCAATACAAATGTGTATTATGTTCTGGTAACATTGTGTTTGTGAATGCCGAGTCCATGCAGGGCCATTGGGATGCAAAACACAAGAGTTTTCATTGTGTTACCATGTTTATGGAAatggtaaaTGAACTGAATAATAAAAGCAAGCAGAAAATTCTCCTCAGTAGTAAAAGTACAGGAAGTACTAATAACAACAATTCTGGAGTAAGTGGCTTGagtaaaaaaactaataaatttataaatgaaaataaccAAACTcctataaaaatagaaatagtCAGCGACAGTGAAGATGAGGACTGTGGTAAATTTCTCGATGATGAAATTATGAACGATACCATGAATATAAATGAATGTATCAGCAATCAATATATGAATATAACAAGAAATAAATCTAATAGTTTAGATGCAGTATCAGTAAAAGAGGAAAATGACAGACTAGATGCTGAAAGAGAACTAGAAATTGAGATATTAGACGAAACAAAGTATATTAATGAAGTTTTAGCtggcattaaaaataatagtctCAGTATTAACGATGCAACAAATTATAACGAAAGTAGTGTTAATTGTGATGTAAATTACaaggaaaataaaaatcaaatcgaTGAACTAAATGAAGTTCTTGTTCATGATGagataaatattaaagaagAGCCAATTGAACCTAATATGTTACTTTCTGTAGGTGTTGTTAGTAATACAGCAATTAAAACTGAAATTATGAGTAATGATGATAAACTAAACCAAACTGAAGATATGATTAATAATGATGAACAAAACTGCAATTTAGTTGTTTCTTGTGAAGCAGTTAAAGATATGATTAATAATGATGAACAAAACTGCAATTTAGTTGTTTCTTGTGAAGCAGTTAATGTAAAACAAGAGAATGAATTTCAATGCGCAGACACAAGTGTTACGGTATGTAAAGTTGAACCTGTTTCTGATAATGAATTTGACCACAATAAAACACCTAGCACTTCGTTTATATATCCAGATGATTGTGACATTGATGAAGAGGATTTAGAAGATGACATTATAGTACTTGATACAAATTTTCAACATGCAAtgataaacacaataaaacaaaatgaaaatgagaaaaataatattaatgatgaaAAATCTAACGGCAATGATGACGACGACGACACTAAATCATTATCATACATAAAACATCAAgagacaaaagaaaaaatacgcAAGCTAAAACTGAAACTgaagaaatttaatgaaatgttaaaaagacctatagaaaaaaacaaattcataaTAGGAAAGAAAAAACCTATGAAATCTGACATTGACAGTGTTACAgttaaaaattacaatgttaAATCAGAAATAAGTGACAGTGTATcaagtaaaaagaataaaaaggaGTGCAATATCTGTGGTTTTGTAGGttcagtttataaatataaaatacatgctGATTCGTGTCTAAATCCGTACACTTGCTCAAAGTGTGACCAAACATATGAAACTATGACTGAATATGTGGCACATTTCAGTGAGCATGGATATAAACGAGAAATGTGTCCACACTGCTCGAAGAAATTCAAAACATTCAGAGATTTAGTCGTACACTTTACGGTTCAACTTAGGATTTCATATTCAAAACTGACAGAGTATAAAGATTCGTATCGCTGCAGTTTATGTGAAACAAATGTTACAAAAGATTTGCTTTTTACACATTGGGAAGAACATTTGCCTTTTCATGAAGATGCTGATGATTCTTtggatgaagatgatgatgaactgaATGATATTGATAATGATGAGAACTCTCAGCAATCTGATAATGAGAATGAGAGATCTGATGATCTTCAAAATACTAGTGATGGAAGGTTGTCACCTAAAATTGTGTTTACAATagtttcaaCTCTcctaaaaaagaagaaaaaaaaccacCAAGACCGATCAtgtgttttatgtaaaaaaatatttatgagacAAGGCGATCTGAAGAGGCATTTAGTAGAACATTTACTGTCCGATGCCAGATTGACTTATGAAGAATTCAACGGCTTCAAATGTCACGTCTGCGATGAAATTTTGAGTGATGTGAAAAATTATAAGCAGCATATGAGAGTTCATGCAAACCTGCCAATATTTCAGTGTCATGTGTGTTCAAATATATCGAGTGATTCCAGTAATTATGCTAAGCATAAAAAGTTACATAGTAATTTGTTGCCAACATGCAAAATTTGCAACAAAAAGTTTCATACTAAACGTATGTTGGATCAACATTTACAGatGCACAAAAACACACCACCAATGAGATGCCTATGCtgcgatatattattttactgccCAACAACATACAAAAGGCACGTTAGAGGCACGCACGCTAAGAGTTTGCACACATGCTCTATATGCACATTGAAGTTTGACACGTCTAAGGAGAGGGCTATACACATGTGGGAGATTCACAAGAAGAGCAAGGCCAACAAGAGGTGTTCGGTCTGCGATCTGACCTTTAGGAATCTGATGAGTGCGAGGAAGCATATGTCAGAGGCACATGGCATTGAGagAGAACCACGGTGA
- Protein Sequence
- MVKVKKKQTREERLEKKRQAEKLRYQRIKNDPGKNAQLKEKENQQYKKKKEKGQIKSIKDMSEREQRAIRKIWRDKTKKHRDRVKLQFTRNNPITPPASDNEDQPPLPQNNIALAAKRRSEIQRKLRNKLEIKQLRQKKKEKNLQDVIIKTTESGKRTSVESLELGVNVKIETYDEDCQIEEVPTEIIELDDSNDEHDDNRHDSNDKLNEIKDNFNDETIKITEDDFKQKTVNITFYEVDPDIVLKDASRINIENIADQKLKIEIRNCWGRVRHVEHVNSKHESLVQAALGKWELWIVDNIHRNTPLMYKCYICNLAWWDLHNFNEHIRIHNEGLNVDLETVYHECNIIAFKGSKPASSEIKIHDRCRKCGCKSEFHSLKNRMTGVYYKCESCNRGFQTCLALFQHQGKCMLNKKKMSYNCNPKTLNNCSICNLHIVTQKLLKYHYTFYHQVRSDMPILNPLVDCLSCPRSFISLSSHICPNRTWSARCDSCCRRFASKMELNIHTRSNISFYCKICSKVYQNKCSEIKHYVNHSNNFVVQYKCVLCSGNIVFVNAESMQGHWDAKHKSFHCVTMFMEMVNELNNKSKQKILLSSKSTGSTNNNNSGVSGLSKKTNKFINENNQTPIKIEIVSDSEDEDCGKFLDDEIMNDTMNINECISNQYMNITRNKSNSLDAVSVKEENDRLDAERELEIEILDETKYINEVLAGIKNNSLSINDATNYNESSVNCDVNYKENKNQIDELNEVLVHDEINIKEEPIEPNMLLSVGVVSNTAIKTEIMSNDDKLNQTEDMINNDEQNCNLVVSCEAVKDMINNDEQNCNLVVSCEAVNVKQENEFQCADTSVTVCKVEPVSDNEFDHNKTPSTSFIYPDDCDIDEEDLEDDIIVLDTNFQHAMINTIKQNENEKNNINDEKSNGNDDDDDTKSLSYIKHQETKEKIRKLKLKLKKFNEMLKRPIEKNKFIIGKKKPMKSDIDSVTVKNYNVKSEISDSVSSKKNKKECNICGFVGSVYKYKIHADSCLNPYTCSKCDQTYETMTEYVAHFSEHGYKREMCPHCSKKFKTFRDLVVHFTVQLRISYSKLTEYKDSYRCSLCETNVTKDLLFTHWEEHLPFHEDADDSLDEDDDELNDIDNDENSQQSDNENERSDDLQNTSDGRLSPKIVFTIVSTLLKKKKKNHQDRSCVLCKKIFMRQGDLKRHLVEHLLSDARLTYEEFNGFKCHVCDEILSDVKNYKQHMRVHANLPIFQCHVCSNISSDSSNYAKHKKLHSNLLPTCKICNKKFHTKRMLDQHLQMHKNTPPMRCLCCDILFYCPTTYKRHVRGTHAKSLHTCSICTLKFDTSKERAIHMWEIHKKSKANKRCSVCDLTFRNLMSARKHMSEAHGIEREPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -