Mnit025263.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- THAP9
- Assembly
- GCA_949126915.1
- Location
- OX421438.1:11921796-11931612[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.1 7.3e+02 1.8 0.7 1 19 375 393 375 393 0.95 2 15 0.0075 0.67 11.4 0.3 1 23 461 484 461 484 0.97 3 15 0.03 2.7 9.5 6.9 1 23 490 513 490 513 0.96 4 15 0.054 4.8 8.7 0.1 1 21 517 537 517 538 0.91 5 15 0.0012 0.11 13.8 1.5 1 23 546 569 546 569 0.96 6 15 0.084 7.6 8.1 0.6 3 23 576 597 574 597 0.93 7 15 0.0011 0.1 13.9 0.1 3 23 611 631 609 631 0.96 8 15 0.00064 0.058 14.7 0.3 1 23 637 659 637 659 0.98 9 15 0.0004 0.036 15.4 0.5 1 23 695 717 695 717 0.97 10 15 0.039 3.5 9.1 0.1 2 23 722 743 721 743 0.95 11 15 0.0015 0.14 13.5 1.8 2 23 762 784 761 784 0.96 12 15 0.0006 0.054 14.8 2.8 1 23 790 812 790 812 0.99 13 15 0.00015 0.014 16.7 6.8 2 23 819 840 818 840 0.96 14 15 0.24 21 6.6 0.6 1 23 846 869 846 869 0.87 15 15 0.73 65 5.1 0.7 2 23 875 897 874 897 0.93
Sequence Information
- Coding Sequence
- ATGAAGGTTAAACTTGCcacccaattatttagtagaaGTGTGGCTACAGCTTTAAAATTGTGTAGAGACGATTTGAATCTTCATAATTTTCAAGACACTGAAGCTACAGAACAATTTGTTCAAATAATAAATGACATGTTTGACGTATTTAATTCTAAATCCATGAGACAGTTTGGGTTTCAAAAGCCGCTACATATAgAAACTGAAATTAGACTTCTGTACATTCCCTTCTACAAATTTAGTCAGGACCACTTAGAAATTATGTTTTCTGCAATCAGGATGCAAGGCGGCTTTAATGACAACCCTAATGTGCGCCAGTTCAAGGGTGCATATAGAAAATTGCTGTGTCACCTAGAATTAAAATGCTTAACTACTGGGAACTGTGTACCGTTAGAGGATGTAGCCATTTTAAATTGTACATCTGGGGCTGCTACAATCATTAATGCTACCACCACCTCTTATCGACACGACGAACAGGAACACCCAGATGAGTTTGATTCCTTAGAGTTTCTACGTCACATACAGCACGATACAGCAGACCTTGCAAATGGTGATAAAACGAATACGGATGACATAAAATGTCTGAAACAAAAGCTAAGAAACATATGTCTGTCGGAACGTTTCTGTGGAATCTGTTTGGAAATTGATGGAAAGCTGTGGAATATAGACTCAGAGTTTGATATAACAGTTGGTTTACAAACACAGCAGAAGTTACTGAAGGACATGATCAGTTATATTCTAAATAATAAGGACTATCACGTACTAGCAAGCACATATTTATGCACTCACTGTATAGAAAAATCAATACAATGTTATCTCTTCATCTACAACGCAGTGCAGCTATCAAATATAATCTTTAAATGTGTTAGCGAACTGCATTCTAAGTCTATAGATGTGTACGATCAATTGGGacagataaataattatgaaaattcttGTGTCGCTATTGTATTAGAACAAGAATCTGAAATATCAGAGTACACAGATATTGATGAGACTGCGGTAGATACAGCAGATCATGTTACAGATGTTGAAATTGAGATCTTTAATATTCCAGAAGATTCTCCGAACAAAACTGCTTCGTTAactttaaagaaaaagaaaagattaaAATCTCTCACTTATAAATGTAGAAGATGCAGAGAGGTTTTGCCATCACATAAAAGTTGGAAAATACATGACAGAGCatATAGATTAAAATTGCACATGGATAGAAGTCACAGTGGTTCTAAATGTGCTCTGTGCTTTAAGAAAGTTAGTAAAAACGAATTGAAAACACACAAATGTAGATACAACTGCTTAGAATGCGTCGAAAATATTTGTATCCATTACAAATACTTGGTTTCCTACCGAGAACAGGTGTTGAATAATGAATCTAAATTTAAGTGTGTTGATTGTGGCTTTATTTGTCCAAGGAGGGAAGCGTTGCTTGGTCATGTGAACAGGGAGCATTTAGATCACCATCCATTTACTTGCGCCCATTGTTCACAACAATTTTACTCAAGAACTACTCTTCGACATCACCTAAACCAATTTCATAAGCAACGACATATCTGTGAGTTTTGCGATCAAGAATTCAACTCCATCTCCTTATTAGATAACCATGTTGAAACATGTAAAACAATCGTAAGAGAACATAGGTGCGATTTGTGTACTACTTCATTTGATACCTTGAAAGATTTAGCAAGTCATGTTAGGTTGCGTCACGATAATGAAGCACTCGATTGCGAATTGTGCGAAAGAAAATTTTTGACAAGCAGTAAACTTCAAGATCATGTATTCAAAGTTCACAGTGGACTGCAAATGAAAAGGAAGAAGAGTATTTTAGACTGTCCGGTGTGCGATGAGAAAGTTGACAACAAACGACAGCTCATGCAACACATAGAAATCCACGGCCCTGATGCCAAATTTCCGTGCAAAGATTGCGAAGCAGTTTTTGACAATATCAAAAAACTTCATGCTCATGTCAGGGTACACTACAACGACGTTATCGAATGTGTTCACTGCAAAAAGATATTAACAGCAACGTTCTTTCCTTATCACATGGTTTATTGCAAGCCAGGACGCGAAGAGGGTGATATTTACACATGCGAAGTTTGTGGCAAAACATTCAACACAGAATTACAAATAAGATTGCATTCTAAAATTCATATAGCAAAAGTTCCATGCCCTATTTGCCAGAAGCCTACAAAGCCCATATATTTGAAGAACCACATAAAGTACATGCATAGTAAACCTAAAAAGGCAAAGAAAGAGCCGAAGTTGAAAGTGAAGCATTACATTAAATGTGATTATTGCGATCACAGAGTATCGAGGCACGGAGAGTTGGAAGCTCACGTAAACAGATTCCATTTGCAAGTGAAACCCTACCAATGTGCTCATTGTCAGAAAACCTTTTTCGGCAAAGAAAGATTACGGGATCATCTTATAACCCACACTACACATCGAACATGCTTTTGCACAGTTTGCGGTCAAAAATTTGAGAATAAGTCGTGCCTCAAATTGCATATGAGAAGACATACAGGATATAGTCCTTATGCGTGTGATATTTGCGGCGATAAGTTTAGGACATCGAGTATAATGAACACTCATAAGGTGAAGAAACATTCGCAGAGGACTGTGAGCTGTCCTCTCTGCGGTGCTATGTTTCATTTGATCAGAGAAATGAGAAGCCACTTTAAAAAAGTCCATTGGAAACAGAAGGGCAAGAAATTCGACCCTAGAGACGTGAAGGAACTACACCCTGCATTCTACCATTTGTTTGAAGATGGTAGATTGCCTAAAATTGAGGGAGaagaattatatatttcttcaaAGTTCAATGaaaaatttgattaa
- Protein Sequence
- MKVKLATQLFSRSVATALKLCRDDLNLHNFQDTEATEQFVQIINDMFDVFNSKSMRQFGFQKPLHIETEIRLLYIPFYKFSQDHLEIMFSAIRMQGGFNDNPNVRQFKGAYRKLLCHLELKCLTTGNCVPLEDVAILNCTSGAATIINATTTSYRHDEQEHPDEFDSLEFLRHIQHDTADLANGDKTNTDDIKCLKQKLRNICLSERFCGICLEIDGKLWNIDSEFDITVGLQTQQKLLKDMISYILNNKDYHVLASTYLCTHCIEKSIQCYLFIYNAVQLSNIIFKCVSELHSKSIDVYDQLGQINNYENSCVAIVLEQESEISEYTDIDETAVDTADHVTDVEIEIFNIPEDSPNKTASLTLKKKKRLKSLTYKCRRCREVLPSHKSWKIHDRAYRLKLHMDRSHSGSKCALCFKKVSKNELKTHKCRYNCLECVENICIHYKYLVSYREQVLNNESKFKCVDCGFICPRREALLGHVNREHLDHHPFTCAHCSQQFYSRTTLRHHLNQFHKQRHICEFCDQEFNSISLLDNHVETCKTIVREHRCDLCTTSFDTLKDLASHVRLRHDNEALDCELCERKFLTSSKLQDHVFKVHSGLQMKRKKSILDCPVCDEKVDNKRQLMQHIEIHGPDAKFPCKDCEAVFDNIKKLHAHVRVHYNDVIECVHCKKILTATFFPYHMVYCKPGREEGDIYTCEVCGKTFNTELQIRLHSKIHIAKVPCPICQKPTKPIYLKNHIKYMHSKPKKAKKEPKLKVKHYIKCDYCDHRVSRHGELEAHVNRFHLQVKPYQCAHCQKTFFGKERLRDHLITHTTHRTCFCTVCGQKFENKSCLKLHMRRHTGYSPYACDICGDKFRTSSIMNTHKVKKHSQRTVSCPLCGAMFHLIREMRSHFKKVHWKQKGKKFDPRDVKELHPAFYHLFEDGRLPKIEGEELYISSKFNEKFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -