Mnit028414.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421442.1:9426896-9429393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00012 0.011 17.0 1.6 2 21 206 225 205 226 0.94 2 11 2.2 1.9e+02 3.6 0.7 3 23 234 254 233 254 0.93 3 11 0.0009 0.081 14.3 1.4 3 23 261 282 259 282 0.96 4 11 0.00013 0.012 16.9 1.3 2 23 288 309 287 309 0.96 5 11 0.025 2.3 9.7 1.1 2 20 313 331 312 333 0.89 6 11 0.0059 0.53 11.7 2.0 2 23 376 398 375 398 0.94 7 11 0.092 8.3 7.9 0.1 3 23 406 425 405 425 0.95 8 11 0.0072 0.64 11.4 3.3 1 23 431 453 431 453 0.98 9 11 0.00072 0.064 14.6 1.4 1 23 459 482 459 482 0.97 10 11 0.00017 0.015 16.5 2.2 1 23 490 513 490 513 0.95 11 11 0.0023 0.21 13.0 6.3 1 23 521 543 521 543 0.99
Sequence Information
- Coding Sequence
- ATGACTAGAGAAGTTGACGTGAAAGCTCTAATATCACATTTAGTGCGAGGGGATGGCTCTGATAAGTGTCGAATATGCTTGGGTGATACTACTGAAGGACAGGTGTACCTCGGAGATACAGTTATGATGGACGGAGAGAGACCGGTGACCCTTGCAGAGCTATTAGAAGTCATCACTGGAATAGAGGTGCACGAGGATGATGAGCTGCCAAACGGGCTCTGTTCAACATGCTCTGGCTCGGCAGTTGATGCTGCACATTTCTCCATTCTCTGCCGGAAATCCAGCAACCAATGGGATAAAATTATTCAACTTGTATACAATTTACCGCTTAACTTACTTGAAGCTGATACAAGCAAACCTGTATACGCTGTTATAGTTGAAGATGAAATGATCATAATCAATGATGATTTAACTCAAAAGAAAGATATCTCTGAAAGTTTTAGTAAAAGCACAGCAAGgactattcaaaatattcataatcCTAATGCAAAATCACTAGGAAAGAGATCTGTAAATAGAAAAGAAGTTAATAAGGATATAAAATATAGCAAGCTGCaagttaaaaataaagctaaaaccAAAAGAAGACAGATTACTATGAATGTGCATAACTGCCAATGTCCCACTTGCggtaaagagtttaaatatgCTCACCTGTTGGCGACTCACTTAAAGCAATCCTGTGACTATCAAAGAGCATGCCACATTTGTGCCAAAGTAATGTTTAGGGATGAATTGTTCTCCCATTTAAACATGGAACATAATCTAGATACTATCAATTGTAAAAAGTGTCCGGCATTCTTTTTCAATCATTCGGAATACGTAAAACACATGAAAATTGCTCATGTTAAAGGGTTGTGTACTTGTGGTGATTGTGGTCGTTCATTCCAAAGCCTATTTGGATTCCAAGCTCATCAaaatgttcatcttgctaagacATGTCCATCTTGCGATAGAGTGTTTAGAAATCAACCCTGCTACATTTACCATTCAAAAGTATGCTGTAATCTAAACAAGTCAGTTGGCTTGCATTATACTAAGAACAAGGTCACGGTTGAAGTGAGAAACCAGAAGAGCCAGAAAAAGATCAGAGTAGGCTTCCGAGGCAGTGCAAGCAACGAATGCATATGTGATTACTGTAACAAAAAGTTCTTTGGTAAAAAGCTTATCCGGGCACATATTCAGAATGTTCATATGACAACGACACACAGACCGTGCCAGTACTGTGGAAAATTCCTTCCAGCAGCTAACATGACTGAGCACATTAAGAACCATGTGCTTGTAAGAACGTATAAGTGCGAGCACTGCAACTTGACCTTAAAAACGAGGTTAGGTTTCATTCAGCATTATCGTTTGCACACTGGTGAAAGACCATACGCTTGCAAGCATTGTGGAGAAACATTTTCTGCTTCATCAAGGAGATCTGAACATATACGTAAAGTTCATAGTACGAACAAGGCTCTGAATCATGCATGTGATATGTGTTCTGCTCGTTTCTCTCTTCCGTACCACTTGAAAAGACATATGTCCTCAGcacatgataaagatgacaaagtGACATATAAATGTCAGAAATGTCAGATAGTGTTCAGGAGTTGTCGAGGGTTGATACACCACAGCAGAAAACATCAGAAGGACGTAATACAAGAACCTAAGAAACGATATGTCAAATTGAACTTTCATAGCTTTAATAAACAGTGA
- Protein Sequence
- MTREVDVKALISHLVRGDGSDKCRICLGDTTEGQVYLGDTVMMDGERPVTLAELLEVITGIEVHEDDELPNGLCSTCSGSAVDAAHFSILCRKSSNQWDKIIQLVYNLPLNLLEADTSKPVYAVIVEDEMIIINDDLTQKKDISESFSKSTARTIQNIHNPNAKSLGKRSVNRKEVNKDIKYSKLQVKNKAKTKRRQITMNVHNCQCPTCGKEFKYAHLLATHLKQSCDYQRACHICAKVMFRDELFSHLNMEHNLDTINCKKCPAFFFNHSEYVKHMKIAHVKGLCTCGDCGRSFQSLFGFQAHQNVHLAKTCPSCDRVFRNQPCYIYHSKVCCNLNKSVGLHYTKNKVTVEVRNQKSQKKIRVGFRGSASNECICDYCNKKFFGKKLIRAHIQNVHMTTTHRPCQYCGKFLPAANMTEHIKNHVLVRTYKCEHCNLTLKTRLGFIQHYRLHTGERPYACKHCGETFSASSRRSEHIRKVHSTNKALNHACDMCSARFSLPYHLKRHMSSAHDKDDKVTYKCQKCQIVFRSCRGLIHHSRKHQKDVIQEPKKRYVKLNFHSFNKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -