Mnit006223.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Musotima nitidalis
Gene Symbol
-
Assembly
GCA_949126915.1
Location
OX421418.1:772176-794589[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.0034 0.31 12.4 3.1 1 23 398 421 398 421 0.96
2 7 0.03 2.7 9.5 2.8 1 23 607 629 607 629 0.97
3 7 0.00015 0.013 16.7 0.6 1 23 634 656 634 656 0.97
4 7 1.1e-05 0.001 20.2 1.6 2 23 663 685 662 685 0.94
5 7 1.3e-06 0.00011 23.2 1.5 1 23 691 713 691 713 0.98
6 7 7.4e-05 0.0067 17.7 5.4 1 23 719 741 719 741 0.99
7 7 1.1e-05 0.001 20.2 0.1 1 23 747 769 747 769 0.98

Sequence Information

Coding Sequence
atgaggAATGTTGACCCACAGCTTCTTGGTGGGAAGATGGACGAGTCCGTTACACACTATATTACGTCTCACCACCCCAATGAGCCCGTTCACGTGGACAGCAATGGGTTGACTCTGAACGTGCAGGACGATGGAGGAGGGAGAGTGGTTACTGTGATGCATCCGCATAACTTCTCCTCAAATATGTGCCGaCAATTGGCAGGAGAGCAAGTTGTAGAGACAGCGTGGGGCGAAGAGTTGTTGGACACAGATGGCCGACTTGCCGCTCTTGTGGCACATCTTGCACAGAACTCACATGCTCGTCCACCACACCACATGAAGGTGACATCAGTAAGATCAGATGTTGACCCATCAGTAATTTTAGATACGCCCTTAAGATTGTTCAACGGTCAAAACTTGGAACATCCACCGGATTCCTCATTGGTGGTGGAGGTGCCCCCACTGCCACCGTTACAAGATATGAAGAGGTGTGCCGATTCTGACTGGTTCCATAACAAGACCAAGACAATACTCAAGgACGGCAGCCCAATAATGACAGAGGCAGAAAATCCAGTATTAGAGTTAGCAGCGGCCTCGTCTCCTGCGCACATCAAGCAGAACAAGAAAAGCCTACCACACAAGAAGAGAATATCCAGAAAACTAAGGAGGAATAATGGAGGCAGTACTCCACAACAGGATATAGTGGTGATAAACTGCTCAGAAGAAGTCCCCCAAGAAATCCTACCAGACAGCTTCTCTTCAGTGCAGCATCAGCAGCACTTGCCGACTGAAGCACACCACATAGAGCATGAGATGCGTGctattttcatttgccaaatcTGTGGCGAGTTCTACGGTGAGGAGCAACTGAAGTTCTTCCACCATCTGAAGCAGCACTACGAGCCGCATTCCACTATTATCATAGAGAATCCTGTCTCCGAACTCGCCATGGACAAGATGACCAACACGTGTATAGTAGACAGCGTGGCAACATTACCAGACTCAATAGTAGAATTATCATTAGAGAACACAGTGCCAAAGACAATATACCAACCGATagaaaaacacattttgtaCACGAGTAGTGATAAATCCATAACTTACCAAAGTAAATCCCATTACTCCGTGGCCAACATGGACAAGGAAACCACTATGCCTAGTGGAGAAGTGGAGAAAAGTGATTTATATGAGACACTGGATAAATTGGAGATGTACAGTTGTGTTAAATGCAACAAGTCCTTTAGGAAGCAGAAGCAGTGTGAAGCTCATATAAAGGAAGCGCATTCTAAGTTGGACGACATGGGGGAATTCAGCGAGCCCGAAGACCTGATGGAGGGCATCCACGTGGCTGTGGAGGAAGCTGGCTCTCCGTACGAGCAGACGCTACTGCCGCATCTCACCGTCGACAACGGGCACGTGCACCAGGACCACGCACGGCATTGGTACAGTCGGAACGGTTCTTCGAATGGCTCTGTCCCGCCCCCAGACGAAGTAGGGGGCGGGGCGGGGCGCGGGGATGATTCCGACAGCGTTGGCCCCGCGGGGGCAGGCCCGGGgggcgcggcgggggcggcgggggcgggccAGGCCGAGGCGTGTGGCGCGGATTGTGCTTATTGCGTGGTGTGTGCGGGCGGACGGCCTGCGCATGAGTCGCCGCATCTCAAAGAGGAAGTCCTTCAACGTATATTCGAGGCAGAGGTATCTAACGAGGAGGCTAACTTCCCCGAGACAATCATCCCGGACAACAACTCCCTCGAAGAACCGGAGCCGCCACCTCCACCGCCGCCGGTCGATGAAGATAAAAGTGCAGGCAACAAAAAGAAGGCCGCGAAGCAGTTCTCGTGCCTGCAGTGCTCGCGCGTGTTCCAGCACCGGAACAGCCTGCTATACCACGTCCTGTCCCACAGCGGCAAGCAGCATCCCTGCCAACAGTGCGGCAAGGAGTTCTACACGGTCACTGCTCTCAAGATCCACGAGCGGGTCCACAGCGGCGACCGTCCCTGCAAGTGTGAGGAATGCGGCCGCGAGTTCCGCCAGTGGTCGGATCTCAAGTACCACAAGATCTCCATACATTCCAATCAGAAACACTTCAAATGCGAGTTCTGCGGCAAGGAGTTCGCCCGCAAGTACTCGCTGAACATCCACCGCAAGATCCACACCGGCGAGAGGAACTACCAGTGCCACTACTGCAGCAAGAGCTTCCGCGCCTCCTCATACCGCCTCAGCCACATGCGGACGCACACAgGTGCACGGCCATATAAATGTGTCGAGTGCGACAAGAGTTTCCGCGCCGCCGGCGATTTGCGGCGTCACGCGCTCATTCACAACAGGCACCGCAATCGACAAAACGAGAAACTACAAAAACTCGCCGACTACGAGCCAGCTGAGAAACCCAAAGTGAAAAACGAACAGCCAACCCAAAAACCAAGCAAAAAAATCGCCGTCGCCTCCACCACCCGTCTCCCATCCATACTTAAAACAGGCGAGAAGAAAACGCCAGCGAAGAAAACCAACGCCAAAAAACCACCGCCAAATGTCACCGTCAGCCAAAACAGAACAGCCGGTCTTCTGAAAGTTACTGAATATAATAACACATTCTTCGAAATGAGACAGGAGGAACAATACACCAAATTCAAAGAAATATATAGCGAAAACCCCGGCACAGAGTTTATTAAAGTGAAAGACTATAGTGAACAAATAGTTTATAAAGACAGTGAACAGTTAAGTGAGGGTAGGGAGTTGATTTTCCGAAATGGACAATTGTGCGATGTGCAGAAGACTTTCCGTGAGAATACAGATGGGAAAATGCATGTTTTCACTCATGTGGAGAAATCCAAAGAGTACAGCGGTCCAGTGGTCACTAATACCGTTTCGCTGAATGAGTTGAGGACTTTGGATCGGGAAGTGGGCAGGGAGAGAGCTGATGGGTTACACGGGGAACAAAACGAAAATGCTTTCCTGGAGAAGTTAGCggctctttacaatataactacATAA
Protein Sequence
MRNVDPQLLGGKMDESVTHYITSHHPNEPVHVDSNGLTLNVQDDGGGRVVTVMHPHNFSSNMCRQLAGEQVVETAWGEELLDTDGRLAALVAHLAQNSHARPPHHMKVTSVRSDVDPSVILDTPLRLFNGQNLEHPPDSSLVVEVPPLPPLQDMKRCADSDWFHNKTKTILKDGSPIMTEAENPVLELAAASSPAHIKQNKKSLPHKKRISRKLRRNNGGSTPQQDIVVINCSEEVPQEILPDSFSSVQHQQHLPTEAHHIEHEMRAIFICQICGEFYGEEQLKFFHHLKQHYEPHSTIIIENPVSELAMDKMTNTCIVDSVATLPDSIVELSLENTVPKTIYQPIEKHILYTSSDKSITYQSKSHYSVANMDKETTMPSGEVEKSDLYETLDKLEMYSCVKCNKSFRKQKQCEAHIKEAHSKLDDMGEFSEPEDLMEGIHVAVEEAGSPYEQTLLPHLTVDNGHVHQDHARHWYSRNGSSNGSVPPPDEVGGGAGRGDDSDSVGPAGAGPGGAAGAAGAGQAEACGADCAYCVVCAGGRPAHESPHLKEEVLQRIFEAEVSNEEANFPETIIPDNNSLEEPEPPPPPPPVDEDKSAGNKKKAAKQFSCLQCSRVFQHRNSLLYHVLSHSGKQHPCQQCGKEFYTVTALKIHERVHSGDRPCKCEECGREFRQWSDLKYHKISIHSNQKHFKCEFCGKEFARKYSLNIHRKIHTGERNYQCHYCSKSFRASSYRLSHMRTHTGARPYKCVECDKSFRAAGDLRRHALIHNRHRNRQNEKLQKLADYEPAEKPKVKNEQPTQKPSKKIAVASTTRLPSILKTGEKKTPAKKTNAKKPPPNVTVSQNRTAGLLKVTEYNNTFFEMRQEEQYTKFKEIYSENPGTEFIKVKDYSEQIVYKDSEQLSEGRELIFRNGQLCDVQKTFRENTDGKMHVFTHVEKSKEYSGPVVTNTVSLNELRTLDREVGRERADGLHGEQNENAFLEKLAALYNITT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-