Mnit024773.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421438.1:3934426-3937366[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00066 0.059 14.7 1.0 1 23 277 299 277 299 0.98 2 11 0.0029 0.26 12.6 5.5 1 23 394 417 394 417 0.97 3 11 0.00024 0.021 16.1 2.1 1 23 421 443 421 443 0.98 4 11 0.00028 0.025 15.9 0.2 2 23 465 487 464 487 0.93 5 11 0.007 0.63 11.5 0.5 1 23 491 514 491 514 0.98 6 11 0.37 33 6.0 0.3 2 23 537 559 536 559 0.89 7 11 8.8e-06 0.00079 20.6 2.7 1 23 569 591 569 592 0.96 8 11 0.0003 0.027 15.7 1.0 2 23 607 628 606 628 0.96 9 11 0.0092 0.82 11.1 0.6 1 23 634 656 634 656 0.96 10 11 0.68 61 5.2 2.9 1 22 662 683 662 686 0.90 11 11 0.12 11 7.6 0.5 3 23 736 756 734 756 0.90
Sequence Information
- Coding Sequence
- ATGTCAGATCAAAATTCGGCCATAGAAAACACTTCAAGGCTCGTGGAGCATGAGCAAGAGCCTGTAGTGGGGACAGGTGTCTATCAGAACATAATGGTGCAAATTAAAACTGAAAATGATAACATTGCCGAAGACTTCTCTATCACTGAAGGTACAAGTACAAGTTTGTGCTGTAATTTGGATGTGAAACAAGAAATACCCATGGAGTTTGACAAAGAGACAGCTGAAGACAATTTAGAAACTATAGCTTCGAGTGATTTATCCataactttagaaaataatcaTGATGTGGTTACCAAAGTGGAGTGTCCTGAACAAGAACAGCTTGATGTGAAAGAAGAAATGGAAACGGGAGACCATTCGCTGGTGTCATATGATTATCCTAATTTTGATGATGTTGGGAGTATGGACAGTAATGATATCGCAGTTTTAGGCAATGTAGAGACCTGTCTGCAAGAATATAGTGTTAAGATTGAATCAGGAGAGCTTTTGGAGaacCCACACCACATCAATGAAGAAACAGAAATTATTCCTGATAAAATTTCTAGCACAAAAATACCAATTATTAAGTCTTCAGTATACCCAAATCTGCAAGATGGATTATTATCTCAGCTAGctgataatttaattaaagaaatattaccgTTAACATCGAAAAACAATGTTTCAGAAGAAATACTACCCACTTCTTCCAACTCCGCAAATATATATGAGGAAACTTTTCAATTGAATTCCATAACTGGTAACGTATTGTCTCTTGAACAAGAAGCATATAGCTTGCTCAAagctaaaaaaaatgttaagggTAAAACACAATCGCAAAAAACATTCACCTGTAAGGCATGTTCGAAAGTATTTAACAATTCATTTGCTAAGAATAGACATATGGCTATCCACAGAACTATAGAAAGAAGAAAACTGGGTGTCATAAAGGGTCTAAAGacaaaagaagaaaacaaaaagaAGTCTAGAGAAGCAGAAGAAAAAAGGTTGATGGAAGCGGAGACAAAGTTTAAAGAAGAGcagaaaagtaaaattaagaagGAATGTGAACAGACCAGAAAGCTCATAAAAAATGAAGATGGTTATGAATGCACTTGTGGGCAAGTTTATCAAAGGAGGATAAGGTTGGAAACATGTATACGATCACACAACGAAGATGAAACTACAAATTTGTGGCACCAATGTACAACCTGTTTAAAATTGTTTAGCGATAAAAAAGAGCTTCTACATCACCGACGCAGGGCTCATAGAAAGAAGTTCCAGTGCAAATTCTGCCCAACAGACTACAACACACGCAAGGAACTGTTTAAACATCTACAAATACACCAGAAGGTGCAACTGATGGAATACAAAGTGATATCAGAAGCAGTGCACAGTAAAAAGAAGTTACGATGTTTCATGTGCCCCAAAAGCTTTGCAGAACTCTCAGATCTCAAATCTCATGTGATGGAGGACCACGAAAGTCCATACACTTGCCCTAATTGCAAGAATACTTTtcctaaaataattgaattcgCAAACCATGTCAAAACTTATCATCCTGATATTGAAGGTCAATCGGCTTTGGATGTCCTTCAAGCATTCTCGAAATTGATGAAGGCCTGGAAATGTGAAGAGTGCGAACTGCAGTTCCACGAGGCAGACAAACTAGCGATACACAGAGTAGAAAAACACAATCCAGAATTGAAAGGAGATCCACAATTTCAATGTACAGATTGTCAAAGGGTTTTCATTAGCCAGAAAGGTCTTACATCTCATAAAAGGGTACATCACAGTGAAAGCATAGAAGTCACAGAGCCTATTGAAAAAGGTATAATGTGTGTAGAATGTAGGAAGATGTGCAAAGATGAGGACGCTCTCACATCACACATGAGATTACATTCGCCAGACCGGAAATATCCTTGCAAGTTTTGTGATTTCCGGTTCGCTACGCCTGAAAAAAGGAAAAGTCATGCCGAGATTCATACAGGTGATATGAAATACGTCTGTTTTATATGTGAATACCAGTGTAGTTCAGAGAACCGTTTAAAACAGCATAAAGAGTCGTTAAAGCATGCAAACATTAAAGAGTTTTTGTTAACTGGCAAACCGTTGATTGAAGAAGAGCCTATCCCTAAACCTAAAGCTAAGAAgaaaaaagaagataaaaaGAAGGATAAAGAAGCTAGTTGTGATGAAAGCATGAGAGACCCTGAAGTATGTTGTGATATTTGTGGTGAAAAGTTTGTCACAGAAGAAATAATGCTTGAACATAAACAGACTCATCCCTTCATTGAATTTCCAAATGAAGATACTCCAACAAGAATATTCTTTAAATAA
- Protein Sequence
- MSDQNSAIENTSRLVEHEQEPVVGTGVYQNIMVQIKTENDNIAEDFSITEGTSTSLCCNLDVKQEIPMEFDKETAEDNLETIASSDLSITLENNHDVVTKVECPEQEQLDVKEEMETGDHSLVSYDYPNFDDVGSMDSNDIAVLGNVETCLQEYSVKIESGELLENPHHINEETEIIPDKISSTKIPIIKSSVYPNLQDGLLSQLADNLIKEILPLTSKNNVSEEILPTSSNSANIYEETFQLNSITGNVLSLEQEAYSLLKAKKNVKGKTQSQKTFTCKACSKVFNNSFAKNRHMAIHRTIERRKLGVIKGLKTKEENKKKSREAEEKRLMEAETKFKEEQKSKIKKECEQTRKLIKNEDGYECTCGQVYQRRIRLETCIRSHNEDETTNLWHQCTTCLKLFSDKKELLHHRRRAHRKKFQCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEAVHSKKKLRCFMCPKSFAELSDLKSHVMEDHESPYTCPNCKNTFPKIIEFANHVKTYHPDIEGQSALDVLQAFSKLMKAWKCEECELQFHEADKLAIHRVEKHNPELKGDPQFQCTDCQRVFISQKGLTSHKRVHHSESIEVTEPIEKGIMCVECRKMCKDEDALTSHMRLHSPDRKYPCKFCDFRFATPEKRKSHAEIHTGDMKYVCFICEYQCSSENRLKQHKESLKHANIKEFLLTGKPLIEEEPIPKPKAKKKKEDKKKDKEASCDESMRDPEVCCDICGEKFVTEEIMLEHKQTHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -