Mnit023658.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421436.1:7878490-7890572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-05 0.00098 20.3 2.0 2 23 260 281 259 281 0.97 2 12 0.066 5.9 8.4 0.9 3 23 291 312 291 312 0.94 3 12 3.4 3e+02 3.0 0.8 1 23 316 339 316 339 0.88 4 12 0.0055 0.49 11.8 5.1 1 23 412 434 412 434 0.99 5 12 0.00055 0.049 14.9 0.9 2 23 443 465 442 465 0.96 6 12 4.7e-05 0.0042 18.3 2.4 1 23 496 519 496 519 0.97 7 12 0.072 6.5 8.3 2.6 1 23 523 546 523 546 0.89 8 12 0.023 2 9.9 0.1 1 20 565 584 565 586 0.92 9 12 5 4.5e+02 2.5 0.1 2 10 633 641 632 655 0.73 10 12 6.2e-06 0.00056 21.1 0.8 1 23 664 686 664 686 0.98 11 12 7.1e-06 0.00064 20.9 1.2 1 23 692 714 692 714 0.98 12 12 1.2e-05 0.0011 20.2 2.5 1 23 720 743 720 743 0.98
Sequence Information
- Coding Sequence
- ATGAGGAAACTAAAATCATGTACAGTTTGTTTCACAACCGATGTTAAACTGTTCAACATGGACGTAAATAGTTTACGACATCAATTCAATTTGTTAACTGGTCTCCAGATAAAGAAAGCCAATGGAATGCCAGAATACTTGTGTTATGAGTGCACGGGTCACTTGAAGCACTTTATTAAGTTCAGGGACAAATGTCATAgagcacatttaattttattggagCTGCTAGAGAGTGAGAAGGAGGTTAAAAAAAGCACTCTACAAGAAATAGATGGTGCATTAATGAAAATTAAACCAAACCTCTCAGTCCTTGACAAGAAAAATGCTCATTACatggaaataaaatatcaatggGTGAAGTTTAGCCGTTCTAATATGATCATTAGTGACATGATACCAATAGTGCATTACAGTACCATACCCAAAGAGGACATATTCGAAATAGAGACagattcaaaattaaatgtcaaagATGAGATTGCAAAAGATATaacttttgaagaaactgcttttgaAGATATAGTTGAAGAATTGCCCTCTAATTATAGTCCTGATGTTATGAAATCTGATGTAGAATCTGTGCATAGCGATGGTGAAATGAAAAACGATGAGGCTTCTGACCCTAATACTAATATCGCCAATAGTTTGGATGTAAAGAATGATAAGGAAGCTGATGGCTCTGAGCTTGATACGGAGTATGCAACACTGGTTCCGCTATCGAAGAGTGATGCAAAAGCAGCCATAGAGATATACAAGACATTCAGTGCTGGTAAACTTAAGTGCGAAATATGCGGCAAACGTTTTCATAGAGAAAATGAGTATAAAGCACACTTACGTATGCATGATAcgCATGTAAGTGGAACCCACTGGTGTGAattatgtaactattattacaAAACTGAATTCTTATTAAAAAGTCACATTACTGAGAAGcacatgtataaatatttatgtaaaagatGCCCAGAAGTTAGTTTCGACagACGCACGGCAAAAAAGCACTACATCTTCATTCATATGCAAAAGGGTCAGAAAAAGAAAGATGACTGGGAGCAAGATAGACCTAGTTGGCTTAAAAACACTGGTATGAAAGGATCAAAACGCTTCAATCCTGTCGGACGAAAACCCTTAAAGTTGCCAGCTGATTTTCTAGTTTACTCCCCTGTTGGTCAAAAAGAACAGTATGAAATTGTAGAAAAGAGAAAAACTACTAGAAATTATTTAGATTCAAGGTACACATGTGAAATGTGCTATAGGGGCTTTCGGGAACAGTGCACTTATGACAAGCACATGAGGAAACATAATCCTGAGTACGCCGGCAAAGTGCAATGCGACATGTGCAAATTGTATTTCAAGGACTCAAGGAAACTGTACAGGCATATGATCATCACTCACATATTCAAATATACGTGCCAGACCTGCAACTTTGACTGTTTTAACAGgagCCAAGCGCACATGCATTACAAATGGCATAAGAATGTGACTTACGACTGTCCGCACTGTGACAAGATCTTCAAaAAATCGTCGACCCAACTGACGCACATCAGGATAAAGCATCCATCGACGTTTATATGCAACCTCTGCGGCCACAGTTTTGTCAGCGAATCAGGTCTCTACTGCCACAAGCAAATATCGCATACTAAAGAGGAAATAGACGCGGTGGCTGATGTTGCAACAGACGATACTGCCTCATTCTTCTGCTCAGACTGCGACATTCGCTTCGTGAACCAAGTTGCCTTTGACATCCATCTCGGAAGCTCCAACAAGCATGCTGACACCAACTTatcaATAAATCGGTCAAGAAGCACGCCCCGGGGCCGCGCAGGTCGCCCGCGCAAAGAtggcggcggcgggggcagcTCAGAGGTACTCAACAATGGCGTCATCACCGCTACCAAGTGTGATATCTGTGGCCAATCTCTTCTGAACGATGTGCAAGCCCGCAAACACTACGAAGCGGAACATCCCGGGGCGGAGTTCCTCAAGCGGTACATGTGTGATGTATGTGGACATACCACCAAGCAATACGCGAACCTGATGGTGCACATGAGAATACACACCCGAGAGAAGCCGTACCAATGTCCGCATTGCGACAGAAGATTCAGCATGCCTAGCAACCGGGACCGGCATATTCTGGTTCACACTGGTGAGAAGCGCTACGAGTGCCAACACTGCTATCGCCGTTTCAGCCAAAGTAGCGCTCTCAAGCTTCACGTACAAACGGTCCACTTAAAGATCCCCTACGCTCCCTGGGATAAGAAGAACAGGAAGAGACGAAAGCAACAAGAACAGAATTCAGCTCCCGTCGACATTATCAACCCTGAAATGGTGCTTCCGAATACTACGCAGAAGTTGGTGTTTGAACAAGGAGATTATCTCACTGCCTATATAACTTATAATGAGTGA
- Protein Sequence
- MRKLKSCTVCFTTDVKLFNMDVNSLRHQFNLLTGLQIKKANGMPEYLCYECTGHLKHFIKFRDKCHRAHLILLELLESEKEVKKSTLQEIDGALMKIKPNLSVLDKKNAHYMEIKYQWVKFSRSNMIISDMIPIVHYSTIPKEDIFEIETDSKLNVKDEIAKDITFEETAFEDIVEELPSNYSPDVMKSDVESVHSDGEMKNDEASDPNTNIANSLDVKNDKEADGSELDTEYATLVPLSKSDAKAAIEIYKTFSAGKLKCEICGKRFHRENEYKAHLRMHDTHVSGTHWCELCNYYYKTEFLLKSHITEKHMYKYLCKRCPEVSFDRRTAKKHYIFIHMQKGQKKKDDWEQDRPSWLKNTGMKGSKRFNPVGRKPLKLPADFLVYSPVGQKEQYEIVEKRKTTRNYLDSRYTCEMCYRGFREQCTYDKHMRKHNPEYAGKVQCDMCKLYFKDSRKLYRHMIITHIFKYTCQTCNFDCFNRSQAHMHYKWHKNVTYDCPHCDKIFKKSSTQLTHIRIKHPSTFICNLCGHSFVSESGLYCHKQISHTKEEIDAVADVATDDTASFFCSDCDIRFVNQVAFDIHLGSSNKHADTNLSINRSRSTPRGRAGRPRKDGGGGGSSEVLNNGVITATKCDICGQSLLNDVQARKHYEAEHPGAEFLKRYMCDVCGHTTKQYANLMVHMRIHTREKPYQCPHCDRRFSMPSNRDRHILVHTGEKRYECQHCYRRFSQSSALKLHVQTVHLKIPYAPWDKKNRKRRKQQEQNSAPVDIINPEMVLPNTTQKLVFEQGDYLTAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -