Mnit011233.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- Zfpm1
- Assembly
- GCA_949126915.1
- Location
- OX421423.1:2560748-2583102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7 3.3e+02 2.9 0.4 2 23 6 27 5 27 0.95 2 13 0.0096 0.86 11.0 0.0 3 23 993 1014 992 1014 0.92 3 13 1.8e-05 0.0016 19.6 1.7 2 23 1119 1140 1118 1140 0.97 4 13 0.00053 0.047 15.0 3.6 1 23 1146 1168 1146 1168 0.98 5 13 0.0048 0.43 12.0 2.7 2 23 1175 1196 1174 1197 0.95 6 13 2 1.8e+02 3.7 0.6 5 23 1210 1228 1209 1228 0.95 7 13 2.4 2.1e+02 3.5 3.1 1 23 1233 1256 1233 1256 0.93 8 13 0.01 0.92 10.9 0.1 2 23 1272 1292 1271 1292 0.96 9 13 0.0018 0.16 13.3 0.5 1 20 1298 1317 1298 1320 0.89 10 13 0.00071 0.064 14.6 0.1 1 23 1328 1350 1328 1350 0.98 11 13 0.0059 0.53 11.7 7.2 1 23 1356 1378 1356 1378 0.98 12 13 6.9e-06 0.00062 20.9 1.3 1 23 1384 1408 1384 1408 0.98 13 13 0.00069 0.062 14.6 5.5 1 23 1414 1436 1414 1437 0.96
Sequence Information
- Coding Sequence
- ATGGATCAGCTAATGCAGTGCCCTGTTTGCACACTTTACTTGCATAATGGTATGAGTCTGGAGTCCCATTTAGATACGCATCCCAAAGATCAGGTTATAAAAGCATTATGCAATCTAACCAACAAGAGTGGCAGTAGTTATGGCAGCAGAACTCCAACACCGCTGCATTCTGAACGTTCATATAGAAGCAGGTCACGAACTCCAGCCACAGATGATCGATGGACCAATTCACACCGAGGAAGTGAAAGTGACAGGTACTGGCGCAGAACTCCCAGCAGAACCTCCAAATCTAGCCAGGCACATACTAACTCTCGTATTGGCACACCTGACACTAGAATAGgtgaaattaattttgaaagcaATAATCTGAGCAATTCTCTTCCTTATTCTGGCACACCATGTTCTATGAAAATTGATAAAACACAACAGACATATTCAAATACCCCAGTTTTGTCCGAGTTAGATCAGCCATATGTTTTTTATCAAGATTCACAAGAAGACAGGGAGATCAAATATTCTAGAAGTGCAGAGTATGCCCCACTTGATACCAGTTCTTCTGTTTTTGCTAATGAACAAACTCCTGCCATCAAGCTACAGACTACCGTAGTGCCTACCACTTCTAGAAGGGGAACGgataatttagttaaaatattacCAAAACCTAATAATATACTTGTTAAAGCCAATGTCAGTGGAATGCACTACATATCTCCAGGAGTGAAACCAGTGCATGTCATGGTACCTTCAGCACCAACATTTGTACAAAGAAATGTTCAAAACAACTTGGTTTTGGCAACCAGTGTACCTGGTGCACATATTGTGGATCCCAAAGCTATAACCTCATTACCAACTAGTCAATTTAACCAGTTGACCACTAGTACATTCTCACCAGGTACCACAGTTGTTCAAAACTCTCAGATTATTTATAGAGAAATGGTTCATAATATTGATGGCAAGAGATTTATTTCATGTGTGCCTTCGGTCTTGAGCCAAGAAAATGTCACAAATGTTTCTCAGGGTACTTCCTTGTATCAAAATGTCATGGTTCTGGATCAACTAGGGAATGCTTCTTGTATGTACACTGCACCTCAATCAATAATACCAAAACCAAGCATTTCAACTATTTATGCTGATAACTTTGCACATTTACCAACAAATTCTCCAGGAAATATCGATAAGAATCATGGTTTACATGACCCTAATAAAACTCTTATAATAGAGGTTGGCCCCATAGTACCCCCTGAAGCTGATTCACCTATACCTGATACCTCCAATGCTCTAGCAAAAGTACCCACCACAAAGGCAGATATAGCAGGCAACCTAACTATAGAAAAAAGTGAGACACCAGGGTCAAGTAGAGGGCTTAAAATTCTTAGTAATATCAAAGTAGAAGTGCCAGTTCAGCATCACAAAAACATGCTAAATACTGTCATGGACTTGACGGGCCCGAATGATTCAGAATACACTACTCGTCCAATAACACCTGAGAAGATCTTACCTGATTTTGAAGATAATATGGATGACAATCACATGGTCACAGATGAAAGTACTGAACCATCAATATCAAGCAGTGACAGTATTATTTCTCATACTTTTTCAGTCATCAAAAATGTTGGAAATCCTCCATCATATAAAGATTCAAAAGCAAATGTAATAGAGAGTAAAATTGATGTGGAATTCTCGGACAGTTGCCCGGTGCCTGATCTGATCTGCAATGAGAAACCATCTATATCTCCATGTAGTGAATTGTCTGAAAGTGGAGAAAATTCCATTGACCATAATGCAATATCACCAAAGCCTCACAGTAGTCATCAATTAGTTGTAGAACATCACTTTGAAAAGAAAATCCAGTTGCAAAATCAAAAGCCCTACAGGCAAAATGCATTGCGTTTGAACAACATTTATGttaagaaacataaaaaaatattgcaaataaaaaatgctaagTCTTCACCATATTCCAGTTCCACAACAAATATAGAAATAGAACCAAGAGCCTCATCATCTCAAAAGATGCATGAAAgctttagtataaaaaaaaattatgacaccCCCAAAACTGAAGTGGAAGACAAAGTGAGCATTCTGAAGACAATATCAGTTGAGAAAATTTGTCATGATAATTTTGATGCTGACACTGAAGAGCAGTCAATGGACATAGAGCCAGAACCAGTGGCCACGTCAAGTTCTTGTCAGTCTGACATTTATACAACAAGTGTGGATGTTATACAAGTGAAAGAAGAAGCCAATACAAGTACTGAAGAAGGTTTCAGTAATGAGAATAGTCTGTCTAACCGTGACAATATGACACCATTGGAAAATTTGCGACCCATAAATGTCATTACATATGGCAACATTCCACCTGGAGAGTTTGATGACGAGTCAAACCACAGGGAATTGCTAGAACTAGAAGCAGCTTCGAAAAACAAACAGTTTGTTTCTATGATAAATGAGAATTATTTCGGTGATAATATTTATGCTGATTATTTTACTCCAGATAGGGTGGAATCATTTGATGCAGAGAGAGAAAGCTCGGGGTTTCCAAAAGATGGTCCAAAAGATATGTACATATGGGGAGAGCCATCTCATAAAGAGAGTGAGTTTGTTCTTCCAAATTTTATACACGAGAGTTATAAAATAGCAGAGAGTGGTATAGACTATTCCGACTCTCAGGTGGAAAATGATGGTGATCGGGAGAGTAAATTGGGTGTTCTGACTGAGGGTAGAGGGGAATGTGAGCCGCCGTTGAATATTCGTGCTGACGAGAAAATGCCGCCGCGCGGGGAACTTAGCGGCCAGGAGAGTAATGGGGACATGGAATCGTCATGGAGTGGGATGTATCCTGATGTTCCACCTTCGGCGCCTTACGATTTGATAGCGCGTGAGAGCTGGGTTTCTGATGGCTCCGAAATTGATTCCACAGAGAAGAGAGAAAatttGGAAGAAGAACTATTTACAAAAGCTCGAACAAGTGCGTGCGCGCAATGCGGCGCCAAATTCCCGTCCGCCAAAGAGCTGCGCGCGCATCGGGCGCTGGTTCACCCTCCCGCCACGGGCTCCAAAACCAGCTACAGCCGGATGGTCACCGCTCGCACCATCAAGAAAGAGGAGAAGATAGAAGACCCTGTATTACCTGGAACTATGGTGCCGATTGACTCCAAAGAAGCGCTCGCATCCTCGATGCTGGTCTACGATGCTATGACTGAGGCGGTGGCAGACGCCAAGCCCAAGTTAGAGGCGCTGATAAAGCAGGAGCCCAGGCCCCGTCGGAGGCGGGACTATGTCTGTCCCACTTGCAAGGTGGACCAGGGTTCTGATGCAGCATTCCACGCGCACTTGAAGATCCACCCGCTCGAGTGCCTCACGTGCGGAAAGTGCTTCTTTCGCCGTGCCAATTTGGCACTGCACATCAAAACGCATCTCGGCATCAAGAACTTTAAATGCGAAGTTTGCGAGAAGCGGTTCATGACCAAGCAGAAGCTGACGGAGCACCACAACATCCACTCAGGCCGCGCGCCCGTCAAGTGCACAATCTGTGACGACACCTTCAAGAGATATTCCAACATGGTTCAGCATAGAGACCGCCACCACTACCAGAAGAAGGCTCGCGTGCGGGACTTCGTGTGCGAATGTGGGGCCGTGTTGCATTCGCGGGCCAAGCTTCAGTGGCACCGCGAGACGCACGCGCCGCGCCCCCACGCCTGCCTCTACTGCAGCGACAAGTTCCTCCACGCAGCCTCCCTCACCCGCCACGTGCGCCGCACTCACCGCGTCTACTGCCGCTCCGCCAGGGCGCGCCGCAACGACAACGTGCCCTGTCCCGTCTGCAAACAGATATACCTCAGAAGCAATTTACGCGCCCACCTCCTCACGCACAGCGGTAAGCGACCCTACGTCTGCATAGTTTGCAATAAGGCATTCACCACCAAATGGAACCTCAAACTTCACAGATGGACGCACATGAGTCGATCATCCAAACCTTTCAAGTGCACACTATGTAAAGGGGCGTTTATAAGACAAGCAGAGTACATAGCACACATGAACGCTCACAAATCTGTAAGGCCGTACACGTGTAACTACTGCGGCTGTCAGTTTATTAGGAAATACAACTGCCAGCGACACGTTAGGGAACACGAAATGGCGAAAAAGTATGTGTGCAAAGTACCCGAGTGCGGTAAGTCGTTTCATAGAAGTTATTACTTGTCTGAACATATGAAGGTGCATAGTGGGGCGAGGCCTTTCTCGTGCAATATATGTGGCAAAACATCGAGCAATAAATCTAATCACAACAAACATTTGAAGATCCACCATGCGAGGGAGCCGGTCGCCACAGAAGCgtag
- Protein Sequence
- MDQLMQCPVCTLYLHNGMSLESHLDTHPKDQVIKALCNLTNKSGSSYGSRTPTPLHSERSYRSRSRTPATDDRWTNSHRGSESDRYWRRTPSRTSKSSQAHTNSRIGTPDTRIGEINFESNNLSNSLPYSGTPCSMKIDKTQQTYSNTPVLSELDQPYVFYQDSQEDREIKYSRSAEYAPLDTSSSVFANEQTPAIKLQTTVVPTTSRRGTDNLVKILPKPNNILVKANVSGMHYISPGVKPVHVMVPSAPTFVQRNVQNNLVLATSVPGAHIVDPKAITSLPTSQFNQLTTSTFSPGTTVVQNSQIIYREMVHNIDGKRFISCVPSVLSQENVTNVSQGTSLYQNVMVLDQLGNASCMYTAPQSIIPKPSISTIYADNFAHLPTNSPGNIDKNHGLHDPNKTLIIEVGPIVPPEADSPIPDTSNALAKVPTTKADIAGNLTIEKSETPGSSRGLKILSNIKVEVPVQHHKNMLNTVMDLTGPNDSEYTTRPITPEKILPDFEDNMDDNHMVTDESTEPSISSSDSIISHTFSVIKNVGNPPSYKDSKANVIESKIDVEFSDSCPVPDLICNEKPSISPCSELSESGENSIDHNAISPKPHSSHQLVVEHHFEKKIQLQNQKPYRQNALRLNNIYVKKHKKILQIKNAKSSPYSSSTTNIEIEPRASSSQKMHESFSIKKNYDTPKTEVEDKVSILKTISVEKICHDNFDADTEEQSMDIEPEPVATSSSCQSDIYTTSVDVIQVKEEANTSTEEGFSNENSLSNRDNMTPLENLRPINVITYGNIPPGEFDDESNHRELLELEAASKNKQFVSMINENYFGDNIYADYFTPDRVESFDAERESSGFPKDGPKDMYIWGEPSHKESEFVLPNFIHESYKIAESGIDYSDSQVENDGDRESKLGVLTEGRGECEPPLNIRADEKMPPRGELSGQESNGDMESSWSGMYPDVPPSAPYDLIARESWVSDGSEIDSTEKRENLEEELFTKARTSACAQCGAKFPSAKELRAHRALVHPPATGSKTSYSRMVTARTIKKEEKIEDPVLPGTMVPIDSKEALASSMLVYDAMTEAVADAKPKLEALIKQEPRPRRRRDYVCPTCKVDQGSDAAFHAHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNFKCEVCEKRFMTKQKLTEHHNIHSGRAPVKCTICDDTFKRYSNMVQHRDRHHYQKKARVRDFVCECGAVLHSRAKLQWHRETHAPRPHACLYCSDKFLHAASLTRHVRRTHRVYCRSARARRNDNVPCPVCKQIYLRSNLRAHLLTHSGKRPYVCIVCNKAFTTKWNLKLHRWTHMSRSSKPFKCTLCKGAFIRQAEYIAHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHLKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -