Mnit027119.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421441.1:7414703-7469385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.18 16 7.0 0.1 2 23 508 529 507 529 0.92 2 16 0.00051 0.046 15.0 0.0 1 23 539 562 539 562 0.95 3 16 0.35 32 6.1 2.7 1 20 684 703 684 704 0.94 4 16 0.042 3.8 9.0 3.8 2 23 748 769 747 769 0.95 5 16 1.2 1e+02 4.5 1.4 1 23 781 805 781 805 0.90 6 16 0.00081 0.073 14.4 2.0 2 23 812 835 811 835 0.97 7 16 0.082 7.4 8.1 0.2 1 23 841 863 841 863 0.93 8 16 0.0026 0.23 12.8 3.3 1 23 869 891 869 891 0.98 9 16 2.6 2.4e+02 3.3 0.1 2 19 902 919 901 922 0.87 10 16 0.071 6.4 8.3 0.1 1 23 1000 1022 1000 1022 0.97 11 16 2.4 2.2e+02 3.5 7.2 1 23 1029 1051 1029 1051 0.95 12 16 0.0016 0.15 13.4 1.8 1 23 1092 1115 1092 1115 0.95 13 16 6.4e-05 0.0057 17.9 0.6 1 23 1122 1145 1122 1145 0.98 14 16 0.032 2.8 9.4 0.3 2 23 1167 1189 1166 1189 0.96 15 16 7.2e-05 0.0065 17.7 0.2 1 23 1252 1274 1252 1274 0.97 16 16 0.00032 0.029 15.7 1.0 3 23 1282 1303 1280 1303 0.95
Sequence Information
- Coding Sequence
- ATGGTTGAAACTCAGCCTCCACTAGTTCTGTGCATGGAGAACTTAAGTGGGGAAGAAGTTCCCTTAAAAATAGACCCTAGTGATGACTTCCAGTCTTTTCTGATGAAAGCAAAATCGTTACTTGGCTACGACGTTGATTTGAATTCCATAACAGGAAATCAACCTGTTTCATTGAATGACAATATTTATCAATTCTTTGTGACTGCTGAAACCCAAGAACTGaacttaaataactataatCAACTACTTGACCCAAACAACGATCCTACACTAGATACAAGTAATGATACCAATGATTTAGTCTATGTTTTAGATGACGGTACTCAAATTAGAGCATCTCAAATACATTTTGATAATGACGATCCACCCGTAGATCTTACAGCTGAAAAAATACCATTTGTTAAGTACGCCGATGCGGATTTTGACGACTTTGATATTGAAAACATTATTGGTGGTGAGACAGTTAAGTTTAACATAGCAGCAAGTCCTGTATCACGGTTGTCTAGCAGAAATTCAAGCCCTAAGCGTAGTTTCGTCAACACTCTACCATTTAAGCTAGTCTGCAATAACACATCAGTTTTTGAAGCTCAGTTCACGAAATACTTAGAGTCAAGCACAGCTAAGACTTACACAACTTTAAACCCGGTCACCACTAAGAATAAATCTCCGAAAAGTCTCATCAGAGATAATTGTAAAAGTTACGATGATAAATTTAATAAGGGTGAAGATTTTACTGGTTACACAAGAGAAGATGTACTTAACATGTTTAAAGATTCTCCTGTGGCTTCAGTACCATAtgaaaaccataactttaatgAGAAACGTAAGCATGTACGTAAAACTGATCCTTCAAGGGGTGGAAATAAAAATTGGAACTCAAAACCTGcaaattatgacgatgtaataCTTATTGGTGACAATGAAAATCAAGATTGTTTTATCTGTGGTAAATTTGTGGATAACAGTATagataagttatatttattcgACAACGAAGATCAGAAGCTTCACAGATCTTCACCTCAGAAGAAATCATCGCGACAGCTGAAGATAATATGCGAAAATTGCTTAGGAGAAAACTTCAAGCCGTGTAGAATGAAAGGTCCAAATCAATGTTTAAATCCTGACgaatatttagtaataagaaaCAACCAGCAGTATATATTTCAGAAAACGAAGAAAATTGAATTCAAAAGTAACTTTATTGAGACATGTGCTAATGATCATAAACAGCCAGTCATATCAAAACATAAGCAGGACAAGGAAAAGGTTGAATTCGTTAAAGTAGAAATAGGTTCAGACGGAGAAATAGTCACCAAACCCATAGATAATGATCCAAGATCTCCAGACGACATAGTTATAGTCAAAGATGAAGGCAGAGAAGATAGTTCTAGTGATGTGGAAATAGTTGAAACACCAGAAATTGATGAATATATTGTAGATAATTTAGACGATGCTGACGAGGAAGTCAAAGAGTTTTTAGGAAAATATCAATGTGAAAATAGAAGTGTTACTGAGCTGAAGTGTAGattTTGTGGACGTATATTCGAAGAATTATCTGATGTCATGGAACACGTGGATGAGCACAAACATGATTGGGATGAAGGAGTAGTGTATCCTTGTCCAATTTGCGATTACGGTTATGCCAATTCTAAATGGCTAAAAGGTCACTTAAAAGCTGCTCATGATAAGACAGCCTCGTCGACTGTTAAAATGGAAGATACTGAAGATGTACGAAGTGAAAAAGAACCAATCTCTGATGCCATCTCTCCGATAGCAAAAAGAACGAGGAGTTCGATTAGGAAAGGTGATGAGGGAACCGATAAAGACAGTACAGATAAACCAAATGAAGATGAAGAGACAAGCTTCATAAAGGAAACAGAAACGCTTAGTAAAGTAAAAACCGAAATGAAAGAAGAGCCCATGGAGATGAGTGATGATGAGATTTGGATTGTCCAAACTGGTGATGAGAATAATGAACAAGTCCAGAGTCTTCTTCATGCTGCTAAGGGTGGGAGAAGGGAAACTGAGAAGATAGtgaaaaaaatacacaagtGCTATAACTGCAGTCGAATATTTGCTACAGAAGAATCTCTGTACATCCACAAATGCTGTAGCCGTGGTAGAAAGAGAAAATCTAGCAAAGATAGCAGCGATGTCTGTGTTCCAACCAAGGATGACTTCattaagaGAACTCGCCGGAAAAAAGCTAAGGAACTGACGTCTGACCCGCAAATAGTCACTTGTCATAACTGTAACGAGTCGTTTACATCTAAAGTTAGACTCAAGTTTCAtatGCAATTCCACGAGTCAACAAACCTGCTTACTTCGGACGGCAAATACAAGTGTCCGGAATGTACCAACTTGTCATTCTCAGTGGAGACGGAGTTGTTCGACCATGTACACTTCAGACACGACAAGCAGACGCGCTGGCAGTGCCCCGTACGTACTTGTGGGAAGACATTTCATCTTAGAGCAACACTAACAAAACACAGTCGCACACACACTGACACGCGTCGCTACGTGTGTGTGACATGTGGTAAGCGATTCCTCGACAAACAGACTTTGGATGAGCATGGCGTTACACATTTACAGATAAAACCATTCCAATGCCATATATGTCTGAAGCAGCTAACAAGAAGATCTCGTCTCCGAATGCATCTGCGAGCTCATGAAGAGGAGTTGACTCCCAGATTGGTGTTAGTGTGTGCTGTTTGCAGCAGGGGGTTTAGGGATTgtggggatgctgagGAACACGCATCAAAATCAATGGAGTGTATGGATGTGTTTAACAAAGAGATAAAGGTAGAAGATGAAGTGACGGCACAGCTTTCGCCGACCAGCGGACTCGTGAGGGAGCCTATGAAGATTGTTGATTCCCCAAAACTAACCACCCCCATACCCTGTGAAGTACCGAGTGCAATAGCTCAACCTCTTCTCTCCAATCTTGGAGACGACGCGAAAGGGATCATCCGCGTCGTGGAAATTGACAAAGCATTTCGCTGCGAGTACTGCGAGGACGTATTTTATTTGGAAGACGGCTTAAACGCGCATCGAGCGATCCACAAGGATGTGAAAAATCCATTCACCTGCCACATTTGCAAAGTCAGCTTCGCTACTTATTCCAGATGCACAACCCATAAAACCACTCACGGTTTCTACAAGCGCCCCCTGGCGGACGCTAAGAAGCAAGCGTCGGGCCCGGGCGAGCAAGAGGCCGGACCGTCAGCGACGGGCATTTTAGGATATGGCGGATTTCCCGTCGTCAAGCATTTTCTTTGTGAGGATTGCGGCCGTTCATACCTCCATTGGACATATTTACAAGTACATCGTCGTATGAAGCATGCCAACGATAATTTCTACTACAAGTGCAACCAGTGCGACATCACATTTCCAAACAGCTGGAGCCTAGCGTATCACAGGAAGAAAATACACGGACAAAGCGGTCAAGGAGAGCTGGGTGCTACCTCTAAGGTACCCAGGGAAGATTATAgGATACCTTGCCGGGATTGTAAGGAAATTTTGCCAAACAAAACTGCACTTTATAAGCACAGGAAGAAGGAACACAGTGATATGTCCTTACAAGAGAACAAGTCAGATGAATCAGCATGCGTGTCTTGTGAAAAACACACAGAGTTGGACCAAATGCCTGACAAGCAAAAATGTTCTGATGAGTTTTCGCGTCGCGCGGTCCCGCCATTCCGCTGCGGCTCAGTAAGGGGGGAACCCCACACGCATTCCGGAGATAGACCCTTTCCTTGCGACTTGTGTGGAGAGGCTTTTAGAAGATCGACAGCAATGAGGAACCACAGACTGGTTCACGCGAGTGCCCGAGCGTGGGCTTGTACTCGGTGCCCCAAGAGGTTCCGACTGCGCTCCGATCTGAGGAGCCATGTGCGGCTCAAGCATCCCGCGCATCTGGCCGTCATTGAGGTGCATGGCATGAACCCAAGTCCCAGTGAAGTGATGGAACTGCTCACGACCAACAACATTTGTCACAACAAGgGTACCTCAAGTATAATTCCAAGCTGTGCCCGCGCGCTTGCCATGTTGGGTACCGTGGCGCGGACGCCAGTGGCTTACAGCAAACCCATCATCAACGACAAAGATTTCCAATCAGCAAGGCGTGGACGGGGCATAGCCAAGAATCCAAAACGTCCAAAGATCCTTCAACGGGGCATCGAAGACACTGCCCCTCTACAAGACCATCCGGAGTATCCTATACTAAACGTGCCGAGCGGGGAACTCACAGACGCAGAGGTACAGCTGCTCTTACGTGAAGGTGTCTTGGTGAATGGCAATCAGATGGTGCAGTTACAACTAGATGATAACTTATTATTAggttga
- Protein Sequence
- MVETQPPLVLCMENLSGEEVPLKIDPSDDFQSFLMKAKSLLGYDVDLNSITGNQPVSLNDNIYQFFVTAETQELNLNNYNQLLDPNNDPTLDTSNDTNDLVYVLDDGTQIRASQIHFDNDDPPVDLTAEKIPFVKYADADFDDFDIENIIGGETVKFNIAASPVSRLSSRNSSPKRSFVNTLPFKLVCNNTSVFEAQFTKYLESSTAKTYTTLNPVTTKNKSPKSLIRDNCKSYDDKFNKGEDFTGYTREDVLNMFKDSPVASVPYENHNFNEKRKHVRKTDPSRGGNKNWNSKPANYDDVILIGDNENQDCFICGKFVDNSIDKLYLFDNEDQKLHRSSPQKKSSRQLKIICENCLGENFKPCRMKGPNQCLNPDEYLVIRNNQQYIFQKTKKIEFKSNFIETCANDHKQPVISKHKQDKEKVEFVKVEIGSDGEIVTKPIDNDPRSPDDIVIVKDEGREDSSSDVEIVETPEIDEYIVDNLDDADEEVKEFLGKYQCENRSVTELKCRFCGRIFEELSDVMEHVDEHKHDWDEGVVYPCPICDYGYANSKWLKGHLKAAHDKTASSTVKMEDTEDVRSEKEPISDAISPIAKRTRSSIRKGDEGTDKDSTDKPNEDEETSFIKETETLSKVKTEMKEEPMEMSDDEIWIVQTGDENNEQVQSLLHAAKGGRRETEKIVKKIHKCYNCSRIFATEESLYIHKCCSRGRKRKSSKDSSDVCVPTKDDFIKRTRRKKAKELTSDPQIVTCHNCNESFTSKVRLKFHMQFHESTNLLTSDGKYKCPECTNLSFSVETELFDHVHFRHDKQTRWQCPVRTCGKTFHLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELTPRLVLVCAVCSRGFRDCGDAEEHASKSMECMDVFNKEIKVEDEVTAQLSPTSGLVREPMKIVDSPKLTTPIPCEVPSAIAQPLLSNLGDDAKGIIRVVEIDKAFRCEYCEDVFYLEDGLNAHRAIHKDVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLADAKKQASGPGEQEAGPSATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDNFYYKCNQCDITFPNSWSLAYHRKKIHGQSGQGELGATSKVPREDYRIPCRDCKEILPNKTALYKHRKKEHSDMSLQENKSDESACVSCEKHTELDQMPDKQKCSDEFSRRAVPPFRCGSVRGEPHTHSGDRPFPCDLCGEAFRRSTAMRNHRLVHASARAWACTRCPKRFRLRSDLRSHVRLKHPAHLAVIEVHGMNPSPSEVMELLTTNNICHNKGTSSIIPSCARALAMLGTVARTPVAYSKPIINDKDFQSARRGRGIAKNPKRPKILQRGIEDTAPLQDHPEYPILNVPSGELTDAEVQLLLREGVLVNGNQMVQLQLDDNLLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -