Mnit026591.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421440.1:8912948-8938770[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0065 0.58 11.6 0.5 1 23 181 204 181 204 0.95 2 12 1.3 1.2e+02 4.3 0.5 2 23 213 234 213 234 0.92 3 12 0.14 13 7.3 0.4 1 23 238 260 238 260 0.97 4 12 3.1e-06 0.00028 22.0 3.9 1 23 267 290 267 290 0.97 5 12 0.0013 0.12 13.7 1.3 2 22 295 315 294 315 0.94 6 12 6.6e-05 0.006 17.8 0.4 2 23 332 353 331 353 0.94 7 12 0.00015 0.014 16.7 0.6 1 23 358 380 358 380 0.98 8 12 4.7e-05 0.0043 18.3 5.2 1 21 389 409 389 414 0.94 9 12 0.00059 0.053 14.8 2.1 1 23 422 445 422 445 0.94 10 12 0.011 0.97 10.9 1.3 1 23 451 474 451 474 0.96 11 12 0.016 1.5 10.3 0.5 3 19 488 504 486 505 0.91 12 12 0.063 5.6 8.5 0.3 1 23 518 541 518 541 0.94
Sequence Information
- Coding Sequence
- ATGGCTTCTAGATTAATTGTGAAACTTTTTATTCAACAGCACACATTTCTTAACTCACCGTCGGACTTAACAAAATACTCTACTGCAAGACTCCAAGTGTCAAACTTTGTGTTTGATCCCCCAACGGTGAAGAATGAGGAGGAGGAAAGACTGGACAAGCCGGACGTTAAAGTGGAGTTTGATGTGGACAATATCTACGAGGTGGATCCTGAACAATTAAAGGATGAAGTGTATGAGTATACAGATCTTGATGAGAAGCAGTACCAAGATGATGTTTTCCAAGGTGACGTGTCATCGGATGATAACGCGCTCCTGTCTGAGGTTAAAGAAAAGAAGGAAAAAGTTAAAAAGgttaagaaagaaaagaaacgcaaaaaaaagCATCAAGACACATCTAGAGTTATCAATCCATACAAAGATCcactaaagaaattaaaaaatctacctCCCAATTTGGTAGAACTATACACGATGACAGAAGAGGAAATGTGGACCTTAAGGAATGACGATTTGGGCAGCAAATGGTTTAGCAAACTCCGCTACAAGTGCGATAATTGTCTCATTTCTTTCAATACTGAAAAATTAATGCAGGAACATATAGGTTCTAAACATAAAGTGAAAGGAGAAAACAGCAACCAGTGCGATGTCTGCAAAGGATACTTTCTCGCGAAGGACCATTTGACCGCACATTTAGAGCTCCATCTATTGGCGTATCGGTGTAAACTGTGCGATGTCAGAACTACAGTCAAAGCTATCATCAGCAAGCATATGAAGGTCCACGGGGAGGAACTTGTGGTTTACAGTTGCAAGATTTGTGACAAGAAATTTAGTACAAGATCCAAGCTTACATACCatcaaagtaaacaacacaaaGAAAAACTTCAGTGCGACTGCTGCGGTAAGGTTTTCGCAAGCAAAATGACCCTTAAATACCATCTCAGGACACAAATGGGggtcaaagaaataaataaacctaagGAGAAAATGTACATACCCTGCAAAGGctgcaataaagtgtttaacTCGAAGAAAAGTTACAGATCTCATGTTGTCGTCCacaatggaataaaatatccctGCCCAATATGTGGAAAGCTGTTTCAATGGAAGAGGAACTTGTCAAGACACACCAGAAACCACAGAGAGAAGGACGCCGGAGCCCTACACGAATGCAGGGAATGTGGCAAAACGTTCTCCAGTAAAGACTGCTATAACAACCATATGAGACTTAGCAAGAGACATGTACCTGAAGAATCTTATTCACACGAGTGCAGCTATTGTGGAAAAAAATTCGCCACCAAATGGTGCATGGTCGACCATGTCAACTGGGAGCACTTGAAGATATTCAAGTATCAGTGCTGCGTCTGTTTTAAgGCTTTCAAAACAGCAAAAATAATGGTGGCTCATATGAATAATATTCATGAAGGAAAGAAAAGCAAGGAGCCGGACGGCGAACATTTATGTGAAGTGTGTGGAAAATCTTATAagTCAGAGAAGCGTCTGAAAGGCCATGTATGGGCCATGCATACGAGCAGAGCATCCACCAAGACATACAAATGCAAGTTATGCCCAGCGACCTTCGCGTGGCAAACTTCTATATATAAACACACTAGAGCGGCACACGACACCCGGAGGCCTAAGCAAACCCGCAATCCACCTATAAAGAAACAAGATCCCTACCCGGACATCGAACCTGCACGAATGCAGTACTTTCAGCCCACAACTCTCATGCAGAACGTCGTTTTAGTGGCCCCCAGTGCACTAGTTTAA
- Protein Sequence
- MASRLIVKLFIQQHTFLNSPSDLTKYSTARLQVSNFVFDPPTVKNEEEERLDKPDVKVEFDVDNIYEVDPEQLKDEVYEYTDLDEKQYQDDVFQGDVSSDDNALLSEVKEKKEKVKKVKKEKKRKKKHQDTSRVINPYKDPLKKLKNLPPNLVELYTMTEEEMWTLRNDDLGSKWFSKLRYKCDNCLISFNTEKLMQEHIGSKHKVKGENSNQCDVCKGYFLAKDHLTAHLELHLLAYRCKLCDVRTTVKAIISKHMKVHGEELVVYSCKICDKKFSTRSKLTYHQSKQHKEKLQCDCCGKVFASKMTLKYHLRTQMGVKEINKPKEKMYIPCKGCNKVFNSKKSYRSHVVVHNGIKYPCPICGKLFQWKRNLSRHTRNHREKDAGALHECRECGKTFSSKDCYNNHMRLSKRHVPEESYSHECSYCGKKFATKWCMVDHVNWEHLKIFKYQCCVCFKAFKTAKIMVAHMNNIHEGKKSKEPDGEHLCEVCGKSYKSEKRLKGHVWAMHTSRASTKTYKCKLCPATFAWQTSIYKHTRAAHDTRRPKQTRNPPIKKQDPYPDIEPARMQYFQPTTLMQNVVLVAPSALV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -