Mnit027908.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421442.1:4640189-4665559[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.14 13 7.3 1.0 1 23 170 193 170 193 0.98 2 15 8.2 7.4e+02 1.8 0.2 2 20 218 236 217 240 0.88 3 15 0.047 4.2 8.8 4.9 1 23 259 281 259 281 0.98 4 15 0.00085 0.076 14.3 3.1 2 23 286 307 285 307 0.96 5 15 5.4e-05 0.0048 18.1 0.1 1 23 312 335 312 335 0.96 6 15 3.6 3.2e+02 2.9 1.3 2 23 341 363 340 363 0.93 7 15 5.3e-05 0.0048 18.1 1.0 1 23 369 392 369 392 0.97 8 15 3.8e-05 0.0034 18.6 1.9 2 23 398 419 397 419 0.97 9 15 1e-07 9.2e-06 26.7 1.0 1 23 425 447 425 447 0.98 10 15 0.4 36 5.9 6.1 1 23 659 682 659 682 0.98 11 15 0.00048 0.044 15.1 1.2 1 23 688 711 688 711 0.96 12 15 0.0076 0.68 11.3 1.3 2 23 718 740 717 740 0.94 13 15 6e-05 0.0054 18.0 2.2 1 23 782 804 782 804 0.99 14 15 0.26 23 6.5 0.3 2 23 810 832 809 832 0.91 15 15 2.7 2.4e+02 3.3 0.1 1 15 838 852 838 855 0.88
Sequence Information
- Coding Sequence
- atgtttcagctgACTCACCTAACAACGTTGGAAGGGAGTAGGCTTGTCTGCACATTGTGTATCGGACAGCTACGGGACGCATGCACCTTTAAGACCCAAATACTGAAGGCTGAAGAACAGTTTGCTGGATATTGCCGGGGTCAagAACTACAAAAAGCATTTGAGTTTAATGACCCATCATTAGAATCGAATCAGGACAGCGGCATCACACAAAGCGatgATGAAAAATCTACTCCAATTAtagaaacaaaaagtatttcaaaaaaatgtaaagaaaataatgaaaccAAGAGAAAGAGACAAAAGATTCTAAAGCTAAAGCAGAAAGAGAGAGAAGATGTCATGGGCAAAGAGTATGATTCAGACGTGCCAATATCCTTATTGGTTGATCAAAgtaaacAGCAACCTGCAGTGAAATACATATCAGAACGTAAAAGAGGAATATTAACGTGCCATATAGTCCTCAAAGAGACCACAGCCTGTCCCTTCAGGCACCACAAAAGCTGGTTCCAATGTTTCTTCTGCTCCCAAGACTTTATCGAAATAAACCTCCTTAGAGACCATACGCAGACCTCTCACTCGGACATAGACtcggaattaaaaaaaataaaacgttacCCGCGCTCGCTTCAAATTGAAATTTCCAATATGGAATGTCGCAACTGTCATTTgagtttggcagatgttaacGCGATGCGACGCCATTTTGGCGAGGCGCACAAGAAGGTTGTTTATACCGAGTGTATTGCTGATTTTAAAATCGATAGAAGCCCGTATAGTTGTCATATATGCCAACAGCAATTTCATGTATTCAGAACATTGACGACACATATTAACGAGCACTACGCCAACTGTATTTGCGATATTTGCGGCAAATCATTTCTTAACTCGAAAAGACTCAAGGTGCACAAGAGAACGCACGAAGCTGGCCATTACCCGTGCCCTGAGTGCGatagaatattaaaaacaaaaacgtcaCTGTCAAATCACATGGAAAACGCACACAGCAAACGTCAAATGAAATGTCAGATCTGTTTGAAACCTATGAAACATTACAACGACAGAATTAAACATATGTCTGAGGCCCACAATATTACGCACAAATTTCAATGCCCAATATGTGGGcgggaatataatataaagcatTATTTAGCTACACATATAAGACAGACCCATGGACATAAGAATAAGAAATGTTTGGAATGTGGTATGGCTTTTATTACAAACCATGGGCTTAAAAAACACATGTCTAGGCATACCGGTGAAAAACCTTTTTCGTGTAATGTTTGCGGGAAATCTTATGCAAGGAGTTATACGCTTAAGGAGCATATACGGACTCATGAGATTGCAAGAAGTTATATAAAACAGCTACCAGGTGCCCTAGGAGATGTGACATATGCAATATGCGATGACTGCATATTGAGGCTGCGAGATGCTTGCAGCTTTAAGCGGCAGGTGGTGCTCTGTGAGAAGAGGTTTCATGAGCTCTATGCTAAGGATGCcattaaattaagCAGAGACTTCCTGCTGAGTGATGTGAAAAAAGAAGTATCTGAAGAGGATAAAGATATTTTAGATACATTTGTGCAAGAAGATGCTGCTGTCGCTGATTCAGAAGACGACTGGCCTCTGAACGATGATGACAGAATCGACAACACAGAATTTACGCACATTGAAATAGATGTACCGATGAAATTGAGACCCAAAAGAAAAACTGAAACCGTATCCCTATTGAAACAGAGGCTACTGGGCAAACATAAGGAAAAAGAGAAAGAGAAAGTGAAAGAAAAAGTGAAAGAGAAAGTAAAAGTGAAAGTGAGCAAAAAGAAGCAGCCGAAGCAGAAAGAGAAGACAGAAGTGGAGGTGGAGAAGAATAGGCAAGAGCTAGAAGCATTCGCCGAGGAGGCGAAAAAAGGCAACAAGAAGTCGTGGTTTCGCGTGACTGAGGCGGATTATACCATAGAGGGTGACAAATACCGCTGTAATCACTGCCAGAACCAATATGACAAGAAAAACTCATTTATGTACCACGTGAAAACGAAACATTACAACATACCCAAATATAGATGCACGCATTGCGACAAGGAATTCATGACAGCTGCTCCCTTAACTTTGCACAAGTTAAAGGAGCATAACATAGATGACAGGTTACATTGCAACGCTTGCAAAGGAGTATTCAACAGCAGAGTACAGTTAAGGAAACATATAAACATCTTTCATATGCTTGGTGATAAACACAAATGTGAGTTTTGCGATTATGAAACATTTAGCTTCGAAGGCAACCGTGATCCGAGCAATTTCTTTCGACTCAGCAAAGATGATTATAACCAAGAAGGAGAAATCTATCGTTGCAGTCAATGCGAGAAAGAATTCAAAAGCAGAAAGCTTATGACGAAACACGCAAGAGTTCATAGGAGACCGCCCTTGTCATGCACGAAATGCGACGACAAATTTGCAACAATCTCACGGCTTAAGATTCATGAGTTGCAAATTCATAGCTTGGACACTAGATACCATTGTAACGCCTGCGATGCGGCTTTTAACACCAAACAACAAATAAAGGCAACACAAGAAAACTCTTTCGACTATCTGAAGCAGATTACACCAGAGAGAATGACGACTACATCTGCAAAAGATGTGGAAGAAAATATATCAACAGAGAAGCGATACGAAATCATGTCAAAAAAGTACATTACAAAAAACCAGTGCAGTGTTGTATTTGCAATGAGGAGTTTAAGTTTTCCTCGCATTTAA
- Protein Sequence
- MFQLTHLTTLEGSRLVCTLCIGQLRDACTFKTQILKAEEQFAGYCRGQELQKAFEFNDPSLESNQDSGITQSDDEKSTPIIETKSISKKCKENNETKRKRQKILKLKQKEREDVMGKEYDSDVPISLLVDQSKQQPAVKYISERKRGILTCHIVLKETTACPFRHHKSWFQCFFCSQDFIEINLLRDHTQTSHSDIDSELKKIKRYPRSLQIEISNMECRNCHLSLADVNAMRRHFGEAHKKVVYTECIADFKIDRSPYSCHICQQQFHVFRTLTTHINEHYANCICDICGKSFLNSKRLKVHKRTHEAGHYPCPECDRILKTKTSLSNHMENAHSKRQMKCQICLKPMKHYNDRIKHMSEAHNITHKFQCPICGREYNIKHYLATHIRQTHGHKNKKCLECGMAFITNHGLKKHMSRHTGEKPFSCNVCGKSYARSYTLKEHIRTHEIARSYIKQLPGALGDVTYAICDDCILRLRDACSFKRQVVLCEKRFHELYAKDAIKLSRDFLLSDVKKEVSEEDKDILDTFVQEDAAVADSEDDWPLNDDDRIDNTEFTHIEIDVPMKLRPKRKTETVSLLKQRLLGKHKEKEKEKVKEKVKEKVKVKVSKKKQPKQKEKTEVEVEKNRQELEAFAEEAKKGNKKSWFRVTEADYTIEGDKYRCNHCQNQYDKKNSFMYHVKTKHYNIPKYRCTHCDKEFMTAAPLTLHKLKEHNIDDRLHCNACKGVFNSRVQLRKHINIFHMLGDKHKCEFCDYETFSFEGNRDPSNFFRLSKDDYNQEGEIYRCSQCEKEFKSRKLMTKHARVHRRPPLSCTKCDDKFATISRLKIHELQIHSLDTRYHCNACDAAFNTKQQIKATQENSFDYLKQITPERMTTTSAKDVEENISTEKRYEIMSKKYITKNQCSVVFAMRSLSFPRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -