Mnit026027.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- Gzf1
- Assembly
- GCA_949126915.1
- Location
- OX421440.1:2589882-2609477[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0053 0.48 11.8 0.9 1 23 51 73 51 73 0.97 2 11 0.046 4.1 8.9 0.1 1 23 80 103 80 103 0.92 3 11 0.0007 0.063 14.6 4.5 1 23 134 157 134 157 0.98 4 11 0.00061 0.055 14.8 1.0 1 23 161 184 161 184 0.95 5 11 0.0048 0.43 12.0 0.3 2 21 201 220 200 225 0.92 6 11 1.9 1.7e+02 3.8 0.1 3 23 235 254 233 254 0.85 7 11 0.0016 0.15 13.5 0.5 2 23 275 297 274 297 0.95 8 11 4.9e-06 0.00044 21.4 1.1 2 23 307 328 306 328 0.97 9 11 1.6e-05 0.0015 19.7 0.7 3 23 336 356 334 356 0.98 10 11 7.6e-05 0.0068 17.6 5.9 1 23 362 384 362 384 0.98 11 11 2.3e-06 0.0002 22.4 1.4 1 23 390 413 390 413 0.97
Sequence Information
- Coding Sequence
- ATGGCCTTCCAATTCAGAGAACCCGAGACGTTCAAACCCTCGGGATGCATCTATATTACTCCCAACGCTCGTGAAGTACTTTTGACGAAAGAGGAACAACTTCTGAATTTGATGGAGAGGGCTAAATCTCTGAACTACCTGAACTCGCCTTTCAAATGTGATCTGTGTTACAAAGGCTTCGTCGACTCCAGGGCTTATGGGAATCACAAGGAGAAGCATGATGAGCGAAGCGGGGAGTACGTATGTGAGATCTGTCGCATGCGATACCGTACTGTTAGACAGAGACAGGCGCACGCCATGGCGGCTCACTGCAGGCAGTTTCACTGCAACCTCTGCCAACATCGCGCCCACACTGTAAATCAAGCGAGAGAGCACGAGAAATGGCATAACGGTCACACCTATGAATGTCAACTATGCAGTCAACACTTCAGGAAACCAACATCATATTTGACACACATGCGCAAGCGCCACCCCACAGAACATGTGTGCAATGTGTGTGGGGAGAGCTTCGTGGGGAAACATGGACTCCTCATGCACAAGAGCAAAGCGCACAGGAGGCAGGATCTGAAACAAAGTACAGAAAACGACAGCTCTAAGAAGTACTGTACTGAATGCAACATACAATTCGTGTCAGAGGATGCTTGGAAGAGGCATATATTGAGTTCCCTAAAACATACCTTAAACAATGATTCCAGAACATCGTGTCTCATTTGCAATATAGAAGTCCCTTTAGGTACTCTGAAAGCACATTTGAGGGAACATGAGAAAAAATTGAATTGTAAAAAACTGTTTACTAAAGCTAAACTTTCGCTGGCTAAGGTCTCCTGTGATACGtGTGGCGCATCTTTTCTGCATAGCTCTAAACTCCGTGTGCATATAGAAAGAGTGCATTTGGGGAAGAAATACGTTAAACACGTGGTTTGTGAAATGTGTGGAAAGAAATGTTCGtcAAACGCAGCGCTCAACTACCATCAAAGAACCCATACTGGCGAAAAGCCGTTCGGTTGTCCGCAGTGCGCCAAAAGATTTGCGGACAAGAGTCAACTGCGTCTCCACTCGCGAACTCACTCAGGAGAACGGCCGTACTGCTGTGGACTTTGTGGACACTGCTTCACGCAGCGGGCAGCTCTTAGTAGACACTATCGGGTCCACACCGGCGTGAAGCCCTATATCTGTCAACACTGTTCGAAGCCATTTTCTCAACGCGCGTCTCTTCAAAGCCACGTCCGCAGCGTCCATCTCAAGGTGCCTCGCCACAGGCCTCCCCGAGCCGCGCCCGAGACCGCCCCCGAGACTGCGCCGGGCTCAGCGGCCGGAACAGAGAACGGGGCTTAA
- Protein Sequence
- MAFQFREPETFKPSGCIYITPNAREVLLTKEEQLLNLMERAKSLNYLNSPFKCDLCYKGFVDSRAYGNHKEKHDERSGEYVCEICRMRYRTVRQRQAHAMAAHCRQFHCNLCQHRAHTVNQAREHEKWHNGHTYECQLCSQHFRKPTSYLTHMRKRHPTEHVCNVCGESFVGKHGLLMHKSKAHRRQDLKQSTENDSSKKYCTECNIQFVSEDAWKRHILSSLKHTLNNDSRTSCLICNIEVPLGTLKAHLREHEKKLNCKKLFTKAKLSLAKVSCDTCGASFLHSSKLRVHIERVHLGKKYVKHVVCEMCGKKCSSNAALNYHQRTHTGEKPFGCPQCAKRFADKSQLRLHSRTHSGERPYCCGLCGHCFTQRAALSRHYRVHTGVKPYICQHCSKPFSQRASLQSHVRSVHLKVPRHRPPRAAPETAPETAPGSAAGTENGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -