Basic Information

Insect: Musotima nitidalis
Gene Symbol: pita
Assembly: GCA_949126915.1
Location: OX421417.1:9995554-10018463[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.99 89 4.7 0.8 3 23 207 228 205 228 0.93

2 10 0.0053 0.48 11.8 0.6 2 23 234 255 233 255 0.96

3 10 0.00036 0.032 15.5 0.5 1 23 261 284 261 284 0.96

4 10 0.097 8.7 7.9 0.2 3 23 292 313 291 313 0.96

5 10 6.1e-06 0.00055 21.1 1.0 1 23 321 344 321 344 0.95

6 10 9.5e-06 0.00086 20.5 0.8 1 23 350 372 350 372 0.99

7 10 6.8e-05 0.0061 17.8 7.8 1 23 378 401 378 401 0.97

8 10 0.00017 0.016 16.5 0.2 1 23 416 438 416 438 0.95

9 10 0.0026 0.24 12.8 0.0 2 23 444 465 443 465 0.97

10 10 0.0005 0.045 15.1 2.1 1 23 471 494 471 494 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.99	89	4.7	0.8	3	23	207	228	205	228	0.93
2	10	0.0053	0.48	11.8	0.6	2	23	234	255	233	255	0.96
3	10	0.00036	0.032	15.5	0.5	1	23	261	284	261	284	0.96
4	10	0.097	8.7	7.9	0.2	3	23	292	313	291	313	0.96
5	10	6.1e-06	0.00055	21.1	1.0	1	23	321	344	321	344	0.95
6	10	9.5e-06	0.00086	20.5	0.8	1	23	350	372	350	372	0.99
7	10	6.8e-05	0.0061	17.8	7.8	1	23	378	401	378	401	0.97
8	10	0.00017	0.016	16.5	0.2	1	23	416	438	416	438	0.95
9	10	0.0026	0.24	12.8	0.0	2	23	444	465	443	465	0.97
10	10	0.0005	0.045	15.1	2.1	1	23	471	494	471	494	0.95

Sequence Information

Coding Sequence: atggagaAACGAAAGGACGCTATAAGTGCGTTAAAAATATGTCGATTTTGTTTAACACAAGATGACTCTCTATCAAGCTTATACGACAGGAAAGATAAATCTAGTAATATCGTTCCCAAAGCCCTAAAAATTCTCTCTTGCATTGCTGTAGAGgTGTTTCCTTCTGATAAAATGCCCTCATTTATATGTGAACGCTGTAACTTTTTCATGGATATGTTCTATGATTACAAACAAATATGCAGGAAAGCTGATGAAAGAATATTACAGTACATACAAAATGGAATGACTCTTGAAGCACTGAACTGGCCTGCATCTCTTAGTAACATGTTCAAAAATTCAACAAAGAATCAACAAGTAGTTAAAACTGTTGTGGGTAGTGGAGCCACAGTGGAAGTTATGTCTCAAGATATTTCAAACAGCGAGGAAGAAGAAGATGAAGAGAATGTATACAACATAaagATTGGCGATGGATCAAATACTGGTGCAAAATGCATCAAAATAGTGACATCTAAAAATGAAATGGAATCCAAAGACGCATCAAAATCTCCCAATAAAGATGACAACACCATGTTTGGGGATGCCAAGAGCTCGAAACACTGCGAGGAAGGTAGTTGGGCTTGTGATGAATGCGATTGCAGTTATCCTTTACAACAACTCATGGAGCTGCATAAAAAGCAGAAACATAGAATCCGTACTGTGCAGTGCCAACAGTGCGATGCaaaattcTTCTCTAAAGCGGATTTGATGACACACTCCCTACGTCATTCAGATGATACTCCATTCGAGTGTGTGGCTTGCGATAGAAAGTTCAAACGATTGGCACTCTTGAAGCGACACGAGAAGATATTGCACTCTGACATTGAACAACAAGCGTGTCCGCTATGTCCCGCAACATTCTTGTCCTTAGAGGAGTTAGAGGCTCATCAGCACCGTCGACATCCTCGCCGCTCCGAAAAGCTCCACATTTGCAATCTGTGCGATAAACGattcgCTGAGAAATCGACTCTCCAAAAACATATGGAGGTTATACACTTTAGAAAGCCCAAGTTTCGTTGTGAATACTGTCCGATGCAATTTACTTCAGTATCAAAACTGGCTCGGCATGTTCGGACGCATGCTAGCGGACGGCCTTACCCGTGCAAGTATTGTGAGAAGACCTTCACAAAGTCACATCATTATACAAGACATCTACGTCTGAAACACCGCGATGCATCACAACTGGCCGTCTGCCGCTCAGCAGGCGGGTACCGCTGCGAGCAATGCGGCGAGTCGTTCGGCACTCAAGATTCGCTCCTCTACCACTCAGCCATACACGCCACTCAAAATCTCACCTGCCCTCTGTGTCAAGAACGCTTTGAAGACGTTGACGCCGTCACCGCGCATATTAAGTCACATGTTAATGGTATAGAGTTTATGTGTGATATGTGCGAGCTGGTGTTCACCTCTAGGAGCAAACTTGACCATCACATGAATTTCATGCACGCCGACGAAATATCACAGGAGGTGGACGAATCGTCAACAGAGCTCGAAGGAGAGGACGATGAAGACGACAACGGCATCAacgtAAAAGAAGAGGACGGCGAAATGGTGGTAGAGATTAATAAAAGTGGTTTCCTGCTATCTGAGGCGCAGATCGAGTCCGACGGAAAACCGGAAAATACTAATTCCGAagACAGTGAACCAGAACCGACATACACAGAGCTGTCCAATGTGGACACGGTGGCTATAGTCCGTAAAGAGTCTCCTGCTCCTGCCACAGTGGTCGCAGCAGTTCCAAAGACTACCACAGTCAAAATGTCTCCTGCAGTCGATAACCAGaccGCAAATATACTGAGAAAAGCTGAGGAGGTGAAGCGCAAAGCTCAACAGACGCCTGCTGAACCTGCAAATGCGGAGAAGAAAGTTAAAACCGTGCAAATGGAAAGTGGTGCCAGCGAGAAGTCACTTCGGCTGCTCGAAAAGGAATTGCAGGAGTTGAAAAGaACAAACACACGAAATGAATCGTCTAAAACTCCAGCGAAACCATCGGAGACTTTGAGAAATAGACGTCCGCAACTGTTCTCCTCCACACCTAAACTGAAAACCCCAGAAGAAAAGAAGATAGTATCCAATAAAACCCTTACTGCTGAAAAGAAAGTGTTAGAACGAAGTCGTGTATTAACCAAAGAAAACAAAGAGCCGAAGGAATCTAAGCTGGAGAAGGAGAGAGAAaaggaaataaaagaaaaagagttGAAGGAGAAAGAAAGAGAAGCTAAAGAGAAAGAAaaggaaacaaaagaaaaggaaGCTAAGGACAAAGAAAAGGATACAAAGGAAAAAGAAACTAAGGAGAAGGAAGTTAAGGAGAAAGACAAAGATGCAAAAGAGAAGgagataaaagaaaaagaagtcaAAGAACCTAAAGAAACGGAAATTCCAAAGcATGTAATAAAGAATGGGACCAGTGACAAAAGTCATACAGACGATACGGTTCGCCGATCGACTCGCCCCTCCAAGATCAAAGACTATGCCAAAATGATACGTGACAAGTCCCAAGTGTCATCCGATGATGATTCTGATGACGCGGATGATGAAGAATATAAGGAAATTGAAAAACCTGAGGTTATACAGAATCGGTCCAGAGGTCGTCGTGCGAGTGTGAAGTCCAAATCTCCTGTCGTGACTCCTGTGGCCACACCCACTTGCAGGAAGCGAGGCAGAGGCAGACCTAGGAAGGAACAGCCTAAAGAAGTGCCAGCTAAAatgaaaaaagaagaagaatccaCAGAAACAGACGTTTCGGAAAAAATGGATATAGAAGAATCAATAAATAAGACGCAAGATGTAGACACCAAGAACAAGACCAAAGACGATGACAGTGTTGCCACAACGAAACAAACTAAAACCGAAACTGCCAGTAGTAGAGAATCTCAAGTAGCATCGAAAAATATGGACATGGATATAGATGTGAACACATCTCCGAGTGCTGATCAAAACGCGACTGGCGGCAACTTGCTGGTCTCTCCCTCTGGACAGGCTCTTAAAAAGGTGCCCATGAAAGCTCTGCCGCCGGGAATCAAGCGGCTACCATTACCGTTGGCAGCTAATGCGCGTGCAATGGGCGCCGGCGAGTTGTGCGAAATGCAGATCGGCAAGAAAGTAGTAAAAGTACAGAAGATTGTGATGACTAAAGCAGAGGTCGAAGCTATGGCGAAAAAGGGACTCGTAGAAATGAagGATGGCACGATGGTGTTAAAACAGGGTATCAAGCTACCGTCATGCGACTCTCTCAAATCTAGAGTAGATTTATCTGGCGATAAAGGCAATAAATTGGTGTCAAATGGTTGGTGTGGGGTCTTTGCCCACAAGAATACTAGACGCGATTCCATGCACTTGGTCGACGACACCCTCGGGCTGGACATGGGGCAGGTGGACTTCTTTAGAGTTGCTGCTACCACACGACACATGATCAGAGTGAATCTTTCTcggaagacatcgttgttctga
Protein Sequence: MEKRKDAISALKICRFCLTQDDSLSSLYDRKDKSSNIVPKALKILSCIAVEVFPSDKMPSFICERCNFFMDMFYDYKQICRKADERILQYIQNGMTLEALNWPASLSNMFKNSTKNQQVVKTVVGSGATVEVMSQDISNSEEEEDEENVYNIKIGDGSNTGAKCIKIVTSKNEMESKDASKSPNKDDNTMFGDAKSSKHCEEGSWACDECDCSYPLQQLMELHKKQKHRIRTVQCQQCDAKFFSKADLMTHSLRHSDDTPFECVACDRKFKRLALLKRHEKILHSDIEQQACPLCPATFLSLEELEAHQHRRHPRRSEKLHICNLCDKRFAEKSTLQKHMEVIHFRKPKFRCEYCPMQFTSVSKLARHVRTHASGRPYPCKYCEKTFTKSHHYTRHLRLKHRDASQLAVCRSAGGYRCEQCGESFGTQDSLLYHSAIHATQNLTCPLCQERFEDVDAVTAHIKSHVNGIEFMCDMCELVFTSRSKLDHHMNFMHADEISQEVDESSTELEGEDDEDDNGINVKEEDGEMVVEINKSGFLLSEAQIESDGKPENTNSEDSEPEPTYTELSNVDTVAIVRKESPAPATVVAAVPKTTTVKMSPAVDNQTANILRKAEEVKRKAQQTPAEPANAEKKVKTVQMESGASEKSLRLLEKELQELKRTNTRNESSKTPAKPSETLRNRRPQLFSSTPKLKTPEEKKIVSNKTLTAEKKVLERSRVLTKENKEPKESKLEKEREKEIKEKELKEKEREAKEKEKETKEKEAKDKEKDTKEKETKEKEVKEKDKDAKEKEIKEKEVKEPKETEIPKHVIKNGTSDKSHTDDTVRRSTRPSKIKDYAKMIRDKSQVSSDDDSDDADDEEYKEIEKPEVIQNRSRGRRASVKSKSPVVTPVATPTCRKRGRGRPRKEQPKEVPAKMKKEEESTETDVSEKMDIEESINKTQDVDTKNKTKDDDSVATTKQTKTETASSRESQVASKNMDMDIDVNTSPSADQNATGGNLLVSPSGQALKKVPMKALPPGIKRLPLPLAANARAMGAGELCEMQIGKKVVKVQKIVMTKAEVEAMAKKGLVEMKDGTMVLKQGIKLPSCDSLKSRVDLSGDKGNKLVSNGWCGVFAHKNTRRDSMHLVDDTLGLDMGQVDFFRVAATTRHMIRVNLSRKTSLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -