Mnit025925.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421440.1:1144343-1164451[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.005 0.45 11.9 1.3 1 23 212 234 212 234 0.97 2 12 0.34 30 6.2 2.0 1 23 241 264 241 264 0.95 3 12 0.034 3 9.3 2.3 1 23 268 290 268 290 0.97 4 12 9.4e-05 0.0085 17.3 3.8 1 23 295 318 295 318 0.97 5 12 0.48 43 5.7 0.2 3 23 324 345 323 345 0.88 6 12 8.2e-05 0.0074 17.5 0.2 2 20 353 371 352 373 0.94 7 12 0.061 5.4 8.5 0.0 3 23 384 404 383 404 0.95 8 12 0.13 12 7.5 2.3 2 23 411 433 410 433 0.87 9 12 1.7e-06 0.00015 22.8 1.3 2 23 451 472 451 472 0.97 10 12 3.5e-06 0.00032 21.8 2.3 1 23 478 500 478 500 0.98 11 12 4.4e-05 0.0039 18.4 2.7 1 23 506 528 506 528 0.94 12 12 1.3e-07 1.2e-05 26.3 2.3 1 23 534 557 534 557 0.98
Sequence Information
- Coding Sequence
- atggcagACAGGTGCCGCGTTTGTTTATCTAAAACTGTTAGATTGTATAACATGTACGAACATGGCTTAGATTTGCTTTACACAACACTCACTGGGACTGAGGTCTCTCCAGTTGATGATTTGCCGCAGTACATGTGCTCTATGTGTAGTACACAGCTTGTCAAATGTCAATCATTCCGTGATGCTTGTCTCTACAGCCAGGACGTGATCCGTACTGGGAGATTGGATGATGAtgttATAACAAACTACTATGCACTTGAACTAAAACAGAACATACTCTATAACCTAGATGTCCTATCTCCAAAACCGAACGCACCCAAAATTAAAGAAGAACTAGACATTAAAAACTTTACTAAAATCGACGATAGCATTATTAACAAATTCGATAATGACAAAGAAAAAGTTAAGGTTTTGAAGCAAGAGGAGTTTGAGAACATATTAAAACCCGTATTTAATGATGATTGTGATGTTACTGACGGTGATGATGTTCAAGAAGTGGTATCAGAAGCAGATGCGAATGATGTTGTAGATCTATCGGATTGTGAGGAGCTAGATGTGGTGGTTCTGACGAAAGAAGAGCAGTTAAAAGAGGTGCAAGCGAGGAAGTTGTCGATGAATTATCTGAACTCGTTTTACAAGTGCGACAAGTGCTTCAAAGGCTTCATTACGGATATTACTTATCAGAATCATTTGGTGCGACATGATGAGAGTTCAGGTAAACACGTATGCGACATATGTCAAGCTTGTTGGCCTACCACCAGCACCCTGAGGAGCCACAAACTGATGACCCACGAACGAAACTACATGTGTAGACTGTGTCCGCAGATATTTAAATCTAAacACAGAGCTAAAGAACATTTAAAATGGCACAACGGGCATCGATTTAATTGTGAAATATGCCATTCCAGCTTTTCTAATTCCAGTAGTTTCCTAACGCATTTGAGGAAACAGCATCCATCAAATAACCTATGCGACATTTGTGGGGAATCATTTCTTGGGAAAAATGGTATTAACTTACACAGGAAAAAAGCACATCGCGGTATTGAGAGCTCTCTCCGATGTGAGAAATGCAATAAGATATTCAAGAATCCAACGGCTTTGAGTAAACATTTGAGTGGACTACAGTGTAATGATGAGAGTCTAAGACCCTGTGCACAATGTGGATTAAATTTTGACAGTGACATAACACTGAAGGAACATTTAGATGTACATAGCAAAAAATTGAATGTGACGTGTCAAAAGtgCCAAAGAACATTTATAAACGAACGTTCATACGCAATGCACTGCCAACGAGTGCACCTGGGGTCGAAACTAGTCAAGACATACGTTAATCAGGAAAAAATGAGCGCGGTGTGCGAGATTTGCGGGAAAACTTGTGTCTCCAGGTCAAACCTGATGTATCACCAACGGATTCATACTGGGGAGAAGCCGTTCAACTGTTCACTGTGTCCTAAGAAGTTCAGCACCAACCAACGGTTACAGTTACACATGAGAACCCACACCGGAGAGACTCCTTACAGGTGTGCCCATTGCCCCAAGGCGTTCAAACACAAGGCGGGCTTGAATAGGCATGATCGGGTACACACGGGGGAAAAGCCGTACATCTGCACTCACTGCGGCAAAAGCTTTACCCAATCCAACTCACTAAAACTACATGTAAGAACGGTACACCTAAAGTTACCTGCGCCGTATAAGAAACACCATTCAATCCCCAGATGTACTTTAAATAGCAGTTAA
- Protein Sequence
- MADRCRVCLSKTVRLYNMYEHGLDLLYTTLTGTEVSPVDDLPQYMCSMCSTQLVKCQSFRDACLYSQDVIRTGRLDDDVITNYYALELKQNILYNLDVLSPKPNAPKIKEELDIKNFTKIDDSIINKFDNDKEKVKVLKQEEFENILKPVFNDDCDVTDGDDVQEVVSEADANDVVDLSDCEELDVVVLTKEEQLKEVQARKLSMNYLNSFYKCDKCFKGFITDITYQNHLVRHDESSGKHVCDICQACWPTTSTLRSHKLMTHERNYMCRLCPQIFKSKHRAKEHLKWHNGHRFNCEICHSSFSNSSSFLTHLRKQHPSNNLCDICGESFLGKNGINLHRKKAHRGIESSLRCEKCNKIFKNPTALSKHLSGLQCNDESLRPCAQCGLNFDSDITLKEHLDVHSKKLNVTCQKCQRTFINERSYAMHCQRVHLGSKLVKTYVNQEKMSAVCEICGKTCVSRSNLMYHQRIHTGEKPFNCSLCPKKFSTNQRLQLHMRTHTGETPYRCAHCPKAFKHKAGLNRHDRVHTGEKPYICTHCGKSFTQSNSLKLHVRTVHLKLPAPYKKHHSIPRCTLNSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -