Mnit027460.2
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421442.1:2955400-2960154[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.056 5 8.6 0.0 3 23 29 50 27 50 0.93 2 18 0.14 12 7.4 0.0 2 23 75 97 74 97 0.95 3 18 0.0073 0.65 11.4 1.2 3 23 121 141 120 141 0.96 4 18 0.00025 0.022 16.0 1.8 1 23 145 168 145 168 0.96 5 18 0.25 22 6.6 1.6 1 21 198 218 198 221 0.89 6 18 0.00047 0.042 15.1 0.4 2 23 229 251 228 251 0.89 7 18 0.069 6.2 8.3 0.3 5 23 259 277 258 277 0.90 8 18 2.1e-05 0.0019 19.4 0.8 1 20 283 302 283 305 0.94 9 18 1.6 1.5e+02 4.0 1.6 3 23 338 359 337 360 0.94 10 18 0.052 4.7 8.7 0.2 2 23 386 408 385 408 0.94 11 18 0.025 2.2 9.7 1.3 2 23 431 452 430 452 0.97 12 18 0.0027 0.24 12.8 0.1 1 23 456 479 456 479 0.96 13 18 1.4 1.3e+02 4.2 0.4 2 21 484 503 483 504 0.92 14 18 0.028 2.5 9.6 1.3 3 23 512 534 510 534 0.83 15 18 7.9 7.1e+02 1.9 2.3 1 22 541 562 541 564 0.67 16 18 0.0054 0.49 11.8 1.3 1 23 569 591 569 591 0.96 17 18 8.4e-06 0.00076 20.6 2.1 2 23 598 619 597 619 0.96 18 18 1.5e-05 0.0014 19.8 1.7 1 23 625 648 625 648 0.98
Sequence Information
- Coding Sequence
- ATGGCCATTGCAAGGCGGAATGCTGAGGCAATATTAAAATTCACTACAGCATATCCTTTCCAGCTTCCGCAATCTTCGATGGCCTGTGTCTATTGCCTAGAAAATTTCGAGGATCCCCAAGCATTTAGGCGACACGTGCAGGCCGAGCATAAagttgttaaattaaacgttGCTTTTGCTCATGTACCAAAATCTTACATAAAAGTCGATTGCACAGATCTCACATGTAGAATTTGTTCGGAGGCATATCCAACTTTAGCAGAAATGGCTGATCATTTGGTGACTAACCATGATGTAAATATAGACTTGAATCACGACTTAGGTGTCCTGCCTTTTGTTTTCGGTGCAGTATACGGATCTTGTGCACTTTGCACGGAAATTTTCTCTAACTTCCGATCTTTGAGCAAGCATACGCAGTCGCATTTCCGCAAATACACGTGTGAAACTTGCGGAAGGTCTTATTTCTCCAATTCATCTTGGACAAATCATAAGAAGCTATCACATCAACATATATGTGCCAGATGCAGAAATACTTTCGAGACTTTGCAAGAGAAAAAGGAGCATTTGATCAAGTCGCCCAATTGTTGGGAATACAGGTGTGCGTTATGCGAAGAACGTTTCATGACTAGAAAACATCGGAACTCACATAATGAAGAAGTGCATGGAAAGTCTGCCGTGCCCTTAATTTGTCCAGTTTGCAAGCAAGTATTTCGACAAAGAGATCAATATAGAACACACTTTGTTATATCTCATACAGAAGATTATCTCACATGCACTTGTGGTAGAAAGTTTGATACTAGATATAACTTGGATATGCATGCAGCGGGGCATAAGGATGAGAAGTCCTTTTCCTGTACTGTGTGCTCGAAATCGTTTAACAGAAAAAAAGCTTTGACAGAACACATGTGGGTGCATAAACCAGTCAGCCACGTTATAGCGAAACAGAATGCTGAAGTTGTCTTGAAGTATTCGACCGTATACCCGTTCCGACTGAGGGGCAGTTCGTTGCTATGTGTCTACTGCTGTGAATCATTCCAGGATCCAACAGAGTACAGGGAGCATTTGAATGAGGAGCACCATACTTTCACTGTCTCCACAGCTTTCGCTCACTGTAGTCGCAACAAAAGCTACTTGAAAGTGGATCTCACAGATCTTAGATGCAGAGTTTGCAACATACCTTTCAATGACTTGAACGAAGTTTctcaacatatttataaataccaTTGCAAAAAACTAGATCTTAACTACGAGATTGGTATGCAGCCTTACAAAATTGAAAAAGGCAATTGGAAGTGCTTTATTTGCAAAGAAAAATCTGCAACACTCTTCAAACTTATTCGGCATACAACTACTCACTATCAAATGTTCACATGTGATGTTTGCGCACGAGGATACTATTCAGCCGAAGCGCTGAAGTACCACATTCGATTTGCACATTCAGGCAAAATTACTTGCAGAAAATGCTTGAAAGAATTCCCTAAAGAAGAGGACAAGAAGGAACACTTAAAACAATCTATGCAATGCTGGCCGTTTTGCTGTATACAGTGTGGTCAACGTTTCAACTCCTGGGAGAATAAGCAAAAGCACAGAGTTGAAGTACACGGAAGCAAGCAAGACAAATACGAATGTCCAGATTGCGAAGACGTCTTCAATTGCAGAAAGAGATTCTACGAGCATTACAAACTTGCTCATACTGacgaaaaatatatatgtacgtgTTGCGGATTAATGTTCCCCAACAAAGGAGAATTATACACCCACAGACTATCACATACTGGCGAAAAATCCCAAAAGTGCACCGTTTGCTCTAAAACGTTTTCTAGATACAAATCTCTGAAACAGCACATGGTGATACATAGcgatttaaaaaagtttgtctGTGTCACGTGCGAAAAGCAATTTAATCAAAAGGTTAGCTTGAAGAAGCACGTTAGAACGTACCACCCAGATTTAAATGTCGACATTTAA
- Protein Sequence
- MAIARRNAEAILKFTTAYPFQLPQSSMACVYCLENFEDPQAFRRHVQAEHKVVKLNVAFAHVPKSYIKVDCTDLTCRICSEAYPTLAEMADHLVTNHDVNIDLNHDLGVLPFVFGAVYGSCALCTEIFSNFRSLSKHTQSHFRKYTCETCGRSYFSNSSWTNHKKLSHQHICARCRNTFETLQEKKEHLIKSPNCWEYRCALCEERFMTRKHRNSHNEEVHGKSAVPLICPVCKQVFRQRDQYRTHFVISHTEDYLTCTCGRKFDTRYNLDMHAAGHKDEKSFSCTVCSKSFNRKKALTEHMWVHKPVSHVIAKQNAEVVLKYSTVYPFRLRGSSLLCVYCCESFQDPTEYREHLNEEHHTFTVSTAFAHCSRNKSYLKVDLTDLRCRVCNIPFNDLNEVSQHIYKYHCKKLDLNYEIGMQPYKIEKGNWKCFICKEKSATLFKLIRHTTTHYQMFTCDVCARGYYSAEALKYHIRFAHSGKITCRKCLKEFPKEEDKKEHLKQSMQCWPFCCIQCGQRFNSWENKQKHRVEVHGSKQDKYECPDCEDVFNCRKRFYEHYKLAHTDEKYICTCCGLMFPNKGELYTHRLSHTGEKSQKCTVCSKTFSRYKSLKQHMVIHSDLKKFVCVTCEKQFNQKVSLKKHVRTYHPDLNVDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -