Mnit025208.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421438.1:10724861-10728091[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.003 0.27 12.6 5.5 1 23 159 182 159 182 0.97 2 19 0.00015 0.013 16.7 1.2 1 23 191 214 191 214 0.96 3 19 0.0021 0.19 13.1 0.5 3 23 228 249 227 249 0.97 4 19 0.0079 0.71 11.3 3.0 1 23 258 281 258 281 0.95 5 19 5e-05 0.0045 18.2 1.8 1 23 292 315 292 315 0.97 6 19 0.00012 0.011 17.0 0.5 2 23 345 367 344 367 0.97 7 19 0.0014 0.13 13.6 1.2 2 23 377 399 376 399 0.96 8 19 0.15 13 7.3 1.8 2 19 405 422 404 425 0.91 9 19 0.0044 0.4 12.1 0.5 2 21 430 449 429 452 0.94 10 19 0.45 41 5.8 1.1 3 23 462 483 461 483 0.93 11 19 1.1e-05 0.00096 20.3 1.5 1 23 488 511 488 511 0.97 12 19 0.00023 0.02 16.1 1.2 2 23 520 542 519 542 0.97 13 19 0.0016 0.14 13.5 0.3 1 23 565 588 565 588 0.96 14 19 0.11 10 7.6 0.5 2 23 595 616 589 616 0.92 15 19 0.89 80 4.8 1.3 2 23 622 643 621 643 0.96 16 19 5.4 4.8e+02 2.4 0.8 2 23 650 673 649 673 0.93 17 19 5.4 4.8e+02 2.4 0.9 1 23 679 701 679 701 0.80 18 19 0.057 5.1 8.6 0.2 1 23 708 730 708 730 0.97 19 19 0.2 18 6.9 2.0 1 23 736 759 736 759 0.96
Sequence Information
- Coding Sequence
- ATGCTATCAAACAAAGAAACATTAGACTTAACAATCAAGAAAGCATGCGATGTAAAAGATAACATGAAAGAGCGTAGAGATCCAACATGTTACCTCCCAGAGGAGTCGATGTCCTACgagtttaaagttaaaaaaaagaagaagaaaagaaaaaaacaagagGACCCGTTTAGAGACTTGAATGATGAAAAGGGAGACTTTATGACTCCTCAGGAACCGGTGCTGGAAATGAAGTTGGAGACAGAGGTCACGATTAAAGTTGAAAATATTGAAGTGGAATTGGATATTAATGATTTTGCCAACTATTCCAGCATGGTGGAAGACAACGGTGATGATTTAGAAGAACCAATCGTAAAACTAGAGGAGCAAAATCGTGAAGCTGTCCTTCTGACCTTCGAGAACGTAGTGACCAATGGCGACGATCCAGCAGTTTTAGGTTACAACAACGATAGTACAATAGAGACGGCGCCCAACCACGTGTGCAAAGTCTGCCATCTAGTCTTTCAGTCTTTAAAAACGTTAAAAATGCACCAGAGAAGAAAACACAAAAGCTTCAGGAaatccttcaaacacatatgcgATTACTGCGGCATGTCTTACGAGATGAAGAACAGCTTAGTAGCGCATATGAAAAGGAAACATGCTCCAGGGGTTTTACCAGACGATAATTCTGAGAGAGCATGCGAAATTTGCTCGTTGGTCTTTAAAGGTATTTCAAGATTACGGATGCATATGCGTAGGAAGCACAATTCTTTTGAAGATTCCTTCAAACATGCTTGTTCAGAATGCGGGTTGACCTACGACAAATACCGGAGTTTGCACGTTCACATTCAACGCAAACACGGCGATAACAAACCAACAGAAAACCAATGGTACAATTGTCCATTTTGTCCAAAAATTTTCACTAGAAGAGAAACTTATTCCAGACATGTACAAAGAAAGCATCAAATCTCTGAAGAAGATGCAAACAAAAAGGCTAAAGATATGCctgattattttgaaaattgcCAAAATGTAATGACTGGTGAAGTTACTTGCAGAGAATGTCCGTTAGTATTCTCTTCAATTAATTCTCTGAAACTCCACATGAGGAGGAAGCACAATGCTTTGAAGGAGGATTTCAGACTTAAGTGTAGAATTTGCAACTTGTCTTACGATAAAATTGAGAGCCTCAAAAGACATGTGCGTAGAAAACACGACGAAGAAGGATGTTATTGTGAGCTCTGCAACAAACAGTTTGAAACCAGAGAGGCTTATGTAAGTCATTCTCACGTAAAAGTGACTAAGGAATGTTCAATTTGTGGGCTAATATTCGCATCCCAAGGCGGATTGGGAAAACATTTGAGATGCACTCACAAAATCGAGTCTCCAAAAGTTGCGTTTTGTAGCATATGCAATGAAGGTTTCCACGACAAGAGACAAGTAAAACCCCATCTATTGAAGGTGCATTTCAAAGTATCATACACATGCAAGGATTGCAAGAAAGTATTCAAAGCGAGAGAGAGTTACAGAAGGCATATATTAGTTCAACATAACAAGACAGACAAACCGGAACAGGAATGCAGTAAGTGCAGTGAGAAATTTCCCGATGAGTTTGAGCTGTGTCGTCATATAAACACTGCACACGTGAAAAGTGAAGATTCAAAAAGTTTACTAGAAATTAAGAAAGAAGAGACGGATGAAAAGGAATCTTTCCCTTGCAAGCAATGTCCTGAAATATACTTCTCTTGGGAACTGTTGAAGACTCATTATGAATCGAATCACTTCAAATGCCCCAAGACACAGTGTCAAGTATGCGGTGCAATGGTTCCAGAAACTGAATTACAGAAGCACATTAAAACTATCCATACAGTCACGACACAAACTTGCAGATACTGCGAGTTTCAAACCACAATCAAAGCTAGCATGACTCAGCATCTCTTAAGACATAAGACTGCTACAACATTGCAATGTGACTTCAACGGTTGCAGATACAAAAGTTATTACGAAGGCGCTATGGAGAAACATAAGCAAAAACATCAGGAATGCGGAAAGTTTCAGTGTACAAAATGCCCGTTTCAAAGTATGAACAAGTATATCCTAAGATACCACGAAGAAGCCCATGTAACcggtaagaaaaaatattcttgtGACCAATGCGAGTATGCCACGATACTGCCAGCTAATTTAGTCCAGCACAAATATAAGCATTCAAGTGAAAAACGTTTTAAGTGTGAAGTGTGTCCGTTCGCTACAAAGTACAACACATCTTTAAGATTTCACGTTAAAAAGAAACATTGTGATTTGCCTAGTGATAGTTAA
- Protein Sequence
- MLSNKETLDLTIKKACDVKDNMKERRDPTCYLPEESMSYEFKVKKKKKKRKKQEDPFRDLNDEKGDFMTPQEPVLEMKLETEVTIKVENIEVELDINDFANYSSMVEDNGDDLEEPIVKLEEQNREAVLLTFENVVTNGDDPAVLGYNNDSTIETAPNHVCKVCHLVFQSLKTLKMHQRRKHKSFRKSFKHICDYCGMSYEMKNSLVAHMKRKHAPGVLPDDNSERACEICSLVFKGISRLRMHMRRKHNSFEDSFKHACSECGLTYDKYRSLHVHIQRKHGDNKPTENQWYNCPFCPKIFTRRETYSRHVQRKHQISEEDANKKAKDMPDYFENCQNVMTGEVTCRECPLVFSSINSLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDEEGCYCELCNKQFETREAYVSHSHVKVTKECSICGLIFASQGGLGKHLRCTHKIESPKVAFCSICNEGFHDKRQVKPHLLKVHFKVSYTCKDCKKVFKARESYRRHILVQHNKTDKPEQECSKCSEKFPDEFELCRHINTAHVKSEDSKSLLEIKKEETDEKESFPCKQCPEIYFSWELLKTHYESNHFKCPKTQCQVCGAMVPETELQKHIKTIHTVTTQTCRYCEFQTTIKASMTQHLLRHKTATTLQCDFNGCRYKSYYEGAMEKHKQKHQECGKFQCTKCPFQSMNKYILRYHEEAHVTGKKKYSCDQCEYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -