Mnit027456.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421442.1:2944591-2950043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0045 0.4 12.1 2.4 1 21 110 130 110 131 0.94 2 17 0.031 2.8 9.4 1.4 2 23 159 180 158 180 0.95 3 17 0.0024 0.22 12.9 0.4 2 23 203 224 202 224 0.97 4 17 0.0043 0.38 12.1 0.2 1 23 228 250 228 250 0.96 5 17 0.056 5.1 8.6 0.1 1 23 255 278 255 278 0.85 6 17 0.0059 0.53 11.7 1.8 1 23 284 307 284 307 0.96 7 17 0.27 24 6.5 0.9 1 23 314 337 314 337 0.90 8 17 8.3e-06 0.00074 20.7 1.5 3 23 346 366 344 366 0.97 9 17 1.6e-05 0.0015 19.7 0.7 2 23 373 394 372 394 0.97 10 17 0.13 11 7.5 1.4 1 23 476 499 476 499 0.89 11 17 0.18 16 7.0 0.1 1 23 525 548 525 548 0.96 12 17 0.086 7.7 8.0 1.6 1 23 570 592 570 592 0.97 13 17 0.00068 0.061 14.7 4.2 1 23 596 618 596 618 0.97 14 17 0.028 2.5 9.6 0.6 1 23 623 646 623 646 0.94 15 17 0.27 25 6.4 1.4 1 23 652 675 652 675 0.83 16 17 0.0096 0.86 11.0 1.3 1 23 682 705 682 705 0.94 17 17 1e-05 0.00093 20.4 0.9 1 23 712 734 712 734 0.98
Sequence Information
- Coding Sequence
- ATGAACTACATCAACTGTAATCCTGATGAAGAAAAAACTAGTTACATTATGAAATCTAATTTTAGCAAAAGTTGTCCTGCAATAAATTTAAACGAGGATATAAAGATTAAGCAGGAGCTGGATCTTGACTTAAAAACAACTGAGTTTGAAGTTAAGATAAAGAAAGAGACAAATACAGACTCAGATAACGAAAAACCAATGGAAGTACCTGGGAAAAGACAGTACAAAAGAAGCGCTCGGGCTGAGACACGGATTATTACTAAGAGGAACGCCAGTGCCATCCTCCAATGCTGGTCTGTAAGACCTTTCAGATGGAAAAAGAACAAATTTACTTGTAGTTACTGTGATACAAGTTTCACAGAATGCCAGCCCCTTAGAAACCATGTCAAAAAATGTTCAAACGCACATGGTATCAAAGACATCTACAATAAATTCAAAGAAATGCCAATTATCAATATTGATATAACTGAATCGCGATGCAATTCATGTTCTGCTAGCTTTAGTGATGTTAATCATATGCGAAAGCATGTCATAGAACACGGATTCCCATTTGATGCTAGCTACCCCGATGGAGTATTGCCATTCTTCCTTGATAAGGAGTCTTGGAAATGCGTTATTTGTCAAGAGACATTCAATAACTTTTTGAAACTGTACGAACACATGAACGTCCATTATCAGCACTATATTTGCTCCACTTGTGGCAAAGGTTATATGACAGCACCCCGTTTGAGGAAACATTCAGAAGTTCATATATCCGGGATGTTTCCGTGCAATTTGTGTGGAAGAATATTTACAATGAGGGTAGCTAGAGATGCTCATAAAGCGAGGGTGCATGCGAAAGGTCCACGATATGTTTGCCCTCATTGCAGTTATCGCTTCAACAGCTATATTGATAGAATGACACATTTAAATGTGACACATCGAGAAAAAGAAGTGATGTATAATTGTTCCTACTGTGAGTTAGGCTTTAAAAGTAGTGCTAAGCGATCATTTCACATTCGTTCAGCACATTTTCCTCCAAGAAAAGATTTCGGATGCACGTATTGCGAATGGAAGTTTAAAACACGTTATGAGCTTAAAAGACACATGGTCAGACATACAGGAGAGAAGAATGTGTCTTGTAATGTTTGTGAAAAATCGTTTTCTGGAAAACGAGGACTGACTTCACATCTAAAGACACACGAAGAGTTTAGTTgtTCAGACCCTGAAGTGGAAGAGTCTAGTGTAGGCAATGTTAAACCCGAACGTAAGCCGAGACAGTTGAAAGAGGTAGTTTGCGAACGTCAAATGAGTAGACGACGTCTAGCGAACAATGAACTATCGACTGCGGCAAAGAATCGTCGAGTGAATAGTATGTGGCGGCAAAATGCATTGACAATACTCGCAAGTTCCACCGCATGGGCCTTCAGATGGTTCCATGGCGTTTTCTTTTGCTCTTATTGCGAAGAAAAATTCACAGATGTCCTTGTTTTACGAAAACATTTTTTCAGCGTTCACCTTAACGAGAAGCCTACTAAAAGTGTATTCTCGAAGCTCTTTGAAAACAGTATGTTGAAAATAGACGTCGCCAATTTCTCTTGTAGGCTATGCCAGATGGAAATCAATACAGTAGCCgatttaaaagaacatatcTTGAAAGCTCATAATGTTTCGCTAAATGAGGGATACAGCGACGGCGTGTTGCCTTTCAAACTTGGGATAAACGAGTTCAGTTGTCATCTATGTTTTGAGGTTTTCGAATCGTTTGCCAAAGCCGATACTCATATGAATAGCCATTTCAAGAATCACGTGTGTGATGAATGTGGGAAGACCTTCGTGTCGACCACTAGGTTCAGGCACCATGTCCAAAGCCATGAAGTCGGAACATTTCCATGTGGGGAATGTGATGCTGTCTTTACTAAAAGAGCTGCACGATTCGCCCACAAACATAAAGAACATAAAAAGGGCAGGCGCTATTGTTGCCCAATATGTTCTGAAGGATTTAAGACATATTATATCAGAGCCAAACACTTAGTCACTGAACACGGTGCACCAAAGATTGACTACAAATGCCCATCATGTCCCAAAGTATTTGAAAATGGGTCCAAACGAGCAGCTCACTTCCGACACTCACATACTTCGGTAGAGAGGAAACATGAATGTGAAGAATGCCCTGGAGCTTTTATCTCTAAGTCTAAACTTCTAAAGCATATGCGGAAACATAAGAAAAGAGATGGTCCTTAA
- Protein Sequence
- MNYINCNPDEEKTSYIMKSNFSKSCPAINLNEDIKIKQELDLDLKTTEFEVKIKKETNTDSDNEKPMEVPGKRQYKRSARAETRIITKRNASAILQCWSVRPFRWKKNKFTCSYCDTSFTECQPLRNHVKKCSNAHGIKDIYNKFKEMPIINIDITESRCNSCSASFSDVNHMRKHVIEHGFPFDASYPDGVLPFFLDKESWKCVICQETFNNFLKLYEHMNVHYQHYICSTCGKGYMTAPRLRKHSEVHISGMFPCNLCGRIFTMRVARDAHKARVHAKGPRYVCPHCSYRFNSYIDRMTHLNVTHREKEVMYNCSYCELGFKSSAKRSFHIRSAHFPPRKDFGCTYCEWKFKTRYELKRHMVRHTGEKNVSCNVCEKSFSGKRGLTSHLKTHEEFSCSDPEVEESSVGNVKPERKPRQLKEVVCERQMSRRRLANNELSTAAKNRRVNSMWRQNALTILASSTAWAFRWFHGVFFCSYCEEKFTDVLVLRKHFFSVHLNEKPTKSVFSKLFENSMLKIDVANFSCRLCQMEINTVADLKEHILKAHNVSLNEGYSDGVLPFKLGINEFSCHLCFEVFESFAKADTHMNSHFKNHVCDECGKTFVSTTRFRHHVQSHEVGTFPCGECDAVFTKRAARFAHKHKEHKKGRRYCCPICSEGFKTYYIRAKHLVTEHGAPKIDYKCPSCPKVFENGSKRAAHFRHSHTSVERKHECEECPGAFISKSKLLKHMRKHKKRDGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -