Mnit016391.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421428.1:11447318-11462655[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6 3.2e+02 2.9 0.8 3 20 8 26 6 28 0.84 2 12 0.17 15 7.1 0.3 1 12 210 221 210 230 0.86 3 12 1.1e-05 0.00096 20.3 0.8 1 23 377 399 377 399 0.98 4 12 2.2e-05 0.002 19.3 1.7 1 23 416 438 416 438 0.98 5 12 8.4 7.6e+02 1.8 0.3 1 7 463 469 463 471 0.90 6 12 3.9e-05 0.0035 18.6 0.6 3 23 492 512 490 512 0.97 7 12 0.00079 0.071 14.4 3.8 1 23 528 550 528 550 0.98 8 12 1.3e-06 0.00011 23.2 3.8 1 23 556 578 556 578 0.98 9 12 8.7e-05 0.0078 17.5 2.8 1 23 584 606 584 606 0.98 10 12 9.5e-06 0.00085 20.5 0.4 1 23 612 634 612 634 0.98 11 12 0.0015 0.14 13.5 1.0 1 23 638 660 638 660 0.97 12 12 7.2e-05 0.0065 17.7 0.1 1 23 668 691 668 691 0.97
Sequence Information
- Coding Sequence
- ATGAAgaacataacaataaaatgcaCACTTTGTTGTGATCAAACTTTTGATTCAAAATTGACATTTGCCAATCATCTAGCAAGTGTTTTAGCCAATATATCATGCCCAGTCTGCAATAATAAATGGGCATCTATAGCACATTTAATAGAACACCTAAATCTAGATAACTGTGAACCTGATAGCGGAATACATCATTTGGTTGAAAATAATGATCATCACATAAATGAGATAGTAAATGTAAatgatgaaataattgaatGTGATGATAAAaagcatattaaaatatttgaagaaaCAACTATTCCTGTTCAAATATCTGACGATAAAGAGTTGGTCACCACAGAGGCCTTGGataccaataaaaacatatatttagaAATACTTGATAAATCCGATGACAAATCTTGTATTACAAATAAAGATCTCAAATTTGTGGAAGGTGATGATGGTATGGAGCAGTATGTCTTTATGACCAATGAATTGGACTTGGAAGGTACCGTTGTGACTAAACAAAATAGTGATGGGACTATATCTTTGGAAACTGTCAAagacATGAAGGTGGTTTCTCAAGCTGAGACTGTTATAGCTCCATCTGAAAATGAAGTAACAGACAGTCAAGAGGAGCTTTACAGCTGCAACACCTGCGGAGTGTCTTTTTCCTCAGTCCTTGAACACATACAGAACTATCACAATGACCAGGAAGTTGTAGTTgaggAATCTATAGAAGATGGTAATATTTTAACTCAAGAATTTGACATTGAGTCACAGACTCCAGTTGAAATAAAACATGATGGAACAAAGCGTGTTATCACTGACAATGGTGATATTATCAATGTTAGTGATTTGAACGATATGGAAATTGCAGATCCACCTGTCCCATCACCAAATAGCGCTCAAGTTGTGAAGCCATATCGTCAAGATGGCAAACGTTTTGTGCAAATTGCCAAGTTTTGTGATAGTGTTGTGCAGAACATAAACCCACAGGaaaCTGGAGGTCCATATCACAAAGTGATAGTAAAAGAAGTGATTGTTAATGGAGAAAAGATGAAGACATATTTTTGCATGTCCTGTAACATATATGTTAGCAAATTAGATGATTTCAAAAACCACCCTtgtaatatatTTAAGTATCCTTGCCCTCATTGTCCTGTTGCATACGAGAACTCGAAGTCACTCTGTGCTCATATGAAAGTCCACAAAACGAAAAATAATGAGATGATCTTGCCAGTTGTTGTCGCTAAACCATTCGTATGTGAGATTTGCAAAACCAAGTTCCCAACGAATAAATCGTTAAAATTGCATAAGAGAATGCATGCTCCTATTAAAACACGCCCTATAGACCCGCCCGTAGAAACGTCACCCGGTGTGGAAGGCAGCACTGGTCGATATCGATGCAATGAGTGTGACCAGCTTATTCCCATTGATTACCGAGCTTTACACCAAAAGTCACACACGCAGAACAATCAGATGAACTGTACTATATGCAATAAGAAGTTTGACTCGACCGAGTATCTTGAGATGCACATGAATGTTCATAACACTGATAAGgtacatgtaaataaaacagataaaacTTTGCCATATTCTTGTCTTTACTGCGATCGATGTTTTGCAAGACCACATGAGAAAGTAAAACATGAACGAATACACACAGgaGAGAAGCCACACTCGTGTCAAATTTGTGGCAAATCGTTCCGAGTGGCGTACTGCCTGACCATACATATGCGGACTCACACCGGCGCCAGGCCATACGCGTGTCCAATTTGTGGAAAAAGGTTTAAAGCCCACAGTGTATACAACCACCATCTACAAACGCATTCCGAGGTGCGCCGCTACAAATGTCCATTCTGCCCCAAAGCCTTCAAGACGTCCGTCCAGTTGGCTGGCCACAAGAACTCGCACACTAAACCGTTCTCGTGCCAACATTGTAATAGGCCGTTCGCATCACTATACGCAGTGCGAGTGCACAGCGAAACGCACGCTCGGCAAAACAACTTAAAGTTTGTATGCACTTTGTGCGGAGCGAGCTACGCGCGTGCGTTTGCGCTCAAGGACCACATTAGGCAGCTACATCCCCAACAACTCGACACTGCAGTCTTGACCGAGGTGGTTGAAGAGAAGGGAGATGACGAGTGGGTCATTAAGGACAACTCTGAGATTAAAGTTGTAGAACTGCCAAGTATATCTAGAAAGGTGCTTACCGAAGCGataaCTGAACTAGAAATGACAACTGATGAGCTGTGA
- Protein Sequence
- MKNITIKCTLCCDQTFDSKLTFANHLASVLANISCPVCNNKWASIAHLIEHLNLDNCEPDSGIHHLVENNDHHINEIVNVNDEIIECDDKKHIKIFEETTIPVQISDDKELVTTEALDTNKNIYLEILDKSDDKSCITNKDLKFVEGDDGMEQYVFMTNELDLEGTVVTKQNSDGTISLETVKDMKVVSQAETVIAPSENEVTDSQEELYSCNTCGVSFSSVLEHIQNYHNDQEVVVEESIEDGNILTQEFDIESQTPVEIKHDGTKRVITDNGDIINVSDLNDMEIADPPVPSPNSAQVVKPYRQDGKRFVQIAKFCDSVVQNINPQETGGPYHKVIVKEVIVNGEKMKTYFCMSCNIYVSKLDDFKNHPCNIFKYPCPHCPVAYENSKSLCAHMKVHKTKNNEMILPVVVAKPFVCEICKTKFPTNKSLKLHKRMHAPIKTRPIDPPVETSPGVEGSTGRYRCNECDQLIPIDYRALHQKSHTQNNQMNCTICNKKFDSTEYLEMHMNVHNTDKVHVNKTDKTLPYSCLYCDRCFARPHEKVKHERIHTGEKPHSCQICGKSFRVAYCLTIHMRTHTGARPYACPICGKRFKAHSVYNHHLQTHSEVRRYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHSETHARQNNLKFVCTLCGASYARAFALKDHIRQLHPQQLDTAVLTEVVEEKGDDEWVIKDNSEIKVVELPSISRKVLTEAITELEMTTDEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -