Mnit028381.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- rst2
- Assembly
- GCA_949126915.1
- Location
- OX421442.1:8829506-8840993[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.099 8.9 7.8 0.0 3 23 136 156 134 156 0.96 2 15 0.0022 0.2 13.0 3.2 1 23 257 279 257 279 0.99 3 15 1.4e-05 0.0012 20.0 0.5 1 23 285 308 285 308 0.97 4 15 0.0039 0.35 12.2 2.6 1 23 313 336 313 336 0.94 5 15 1.4e-06 0.00013 23.0 0.5 2 23 498 519 497 519 0.97 6 15 0.00016 0.015 16.6 3.1 1 23 525 547 525 547 0.99 7 15 0.065 5.8 8.4 4.8 1 23 601 623 601 623 0.96 8 15 0.43 39 5.8 0.1 2 23 631 652 630 652 0.96 9 15 0.047 4.3 8.8 3.9 1 23 658 680 658 680 0.95 10 15 0.00031 0.028 15.7 1.5 1 23 686 708 686 708 0.96 11 15 0.022 2 9.9 5.1 1 23 717 739 717 739 0.98 12 15 0.00025 0.022 16.0 0.8 2 23 786 807 786 807 0.97 13 15 0.011 0.95 10.9 5.7 1 23 824 846 824 846 0.96 14 15 8.6e-06 0.00078 20.6 1.7 1 23 852 874 852 874 0.97 15 15 5.4e-06 0.00049 21.2 4.3 1 23 880 903 880 903 0.98
Sequence Information
- Coding Sequence
- ATGAACCAAATAAACTCAGAGATGGATCCGTTAAGCAGTTTCGAATACCCGGGGTATGGAGTTTACAATGCACCCATTATGAACACTTTACCACCACCTCCATATGACTTTGACGTGAAGTTAGAACAACAACCGTCAGTAAACAGTGAATATTACAACCAATTTATGAACATACCACAAGATACAAGCGAAAAAGtattaacaaacataaatacggaCACAACAAATGTAACAAACGATGTACCTAACACATGTAATGAAGCGAAACAAGACAAAACAGAAACCAAAACAACAAATGACATATCTTTAATTAATCCGTTAATGAAACATGTTAAAAAGGAGAAAGGCAGAAAGAGCAGCTACTGGTCCGTTAAAATAACGGATGATGACTTCAAATTCTACGGTTGTTCCGTTTGTGATATAAACTTCATGACTTTACAAGAACTAGATGTACACGTATTGATACACAAAGATAGAGTTACCAGTTATGATTTGAAGCTAAAGAATCTTATTAAACGGAAGCAGAAAAAGAAGGAATTGAAACGGATGAGAAAGGAGAAGAAGGTTAAGTCAGAAGTGAGTCAGGTTCCCGAAATAGAAATTAAGCCGGAAGACGGTTATATAGGTAACGAGAAAGCAACGGAATATGATAGTTTTCCAAATCAGAATAATGAGAATCAACCGTCGAATACAGAAGATAAGAAGGATATTAAGCTTGTAGAAAATGAAAATGGCTGTAATAACACAGCACAGAATTTGGCGAAGATTTACAAGTGTTTTGCTTGTAAGAAGCAGTTTACTTTAAGTTACTATCTCAAGttgcatgtgagatctcataCAGatgaaAAGCCTTACACGTGCGCAGAGTGCGGCCAATCTTTCATAACAGCCAGTAAACTGTCTAGGCACAACAAAAGAATACACCTAGCGATACGGTTCCAGTGTAGGATATGTTACCGGTTCTTTGCAAGATTTGAAAATCTAACGGTCCATTTTGACAAAAAACATTCAGAAGACAAATTAGAAGGAGAGCCGTATGATTACAACGCCATCTTGCCATATTTAAAAGAATTGGAGGAGGAGTTAAAACAGAAGTCCCAGACTGAAGTTAAACCGAACACCGATAACCTGTGGGACATGATCGGTGAGGTGATACCACAGAACGAGGACCCTGGACAGGAGAAGAAATCTGAGGACTTACTGGCACCTaagGAAGAGGACAGTACCAAGGATGACGACAAAGAGGTTAACACAGAGGTCCAAATCGAGGAGGTGAAGGTGGACCCTCCAGACATAGAGATTAAGAAGGAAGTAGAAGATGACAGCGATATGGAGGGGTGTGAAACGGGCAACGGCGATAAAGACGACTCGGATGATGTTAAGGATGAAGGAAACTCAGACGAAGATTACTTTCCATCCAACACTTGGGCGGTCTCACCCAAGTCGGAATCACCCCCCTCCCCTCAAAAACCTAAGGGCAACCACCCCCTCAAGTGTAGCGTTTGCGAGAAGACCGTCAGCACAGCCTCCTATCTGAGGATCCACATGAGAACCCACACTGGGGAGAGGCCTTACAAGTGTTATATATGCAACCGCGGTTTTATAACGTCCAGCAAGATGCATAGGCACGTTCTTACTCATGAGGAAAGTTGGGCAGCTGACGATGAAAAAGGTAAAAAGGAAGGCATTAAAATGGATCCTGATGTTGAAGAAAGTACTGACACAAAGGCGTTAATAAAAAAAGCTAAGGCGAAATTTAACAAAAAGGCGGGAAAGGCCAGCGTGTACAAGAGCAGACCTCACGCCTGCGAGTATTGCCAGAAGAAATTCTTACATTTGGAGACTTTGCAGGTCCACAAGAAAAGTCACGAAGGCGAGATGCTGGTGTTGAAATGCAACTTCTGCCTAGAGGTGATGGCGGATAGTGAGGCCTTGAAACAGCACGAGGCCACCCACGATGGACCGAAGCCCTATTTGTGCACCATTTGCAATAAGGGCTACAAGAAGAAGGAAACTATGgtATACCACAGAAAACATCACAAATCTGACAGGGaatttatttgcaatatttgCTCGAAGAGTTTCAACGCGGCTTGCAAACTGCAAAGACATATAGTCAGCCATAGCACGGACAAGTTTGTGTTGAGATACGAATGTCCCGTCTGTGCGCACATGTTCcatacaaaatatcacataCAAATGCATTTGTCTACCCATCAGAAGGAGGGATTAATATTCGAAGAAAACCGAAACGAAATCCTAGCTATGGTGCTACAGAACGCGCgaaaaataccaaaaaacaaCGACGGCAGCTCAAAACTAACCGAATTAGTACCATCAGACGAGAGATCTCGCGTTTGCAACATATGCGGCGAGATGTTCCAACATTTCTACTATCTTGAAGAGCATCTCAAGAGCCACGGCTCCAAGATCGCCGTAGAGGACTTGAATAAggacgaaataaaaaaacacgtgTGCGAAGTGTGCAATAAGAGTTTTAAACTCCATTATTATCTAAAACTGCACAGTTTCACACATACGAAGGAAAAACCACACATATGTCAGCAATGTGGGAAAGGTTTTATAACAAGAGGCAAATTGAAGAGGCATTTGGAAACGCACACAGGCTTAAAAAGGTACCAATGTCATATTTGCTACAAATTCTTTACAAGAACGAGTTATTTAAGAATTCATGTTCGTACCATACACGGCACGCAAGATTACAATTTTCAttcaaataaagtatataataatttagataTGGACATACCAATGCaggataatttataa
- Protein Sequence
- MNQINSEMDPLSSFEYPGYGVYNAPIMNTLPPPPYDFDVKLEQQPSVNSEYYNQFMNIPQDTSEKVLTNINTDTTNVTNDVPNTCNEAKQDKTETKTTNDISLINPLMKHVKKEKGRKSSYWSVKITDDDFKFYGCSVCDINFMTLQELDVHVLIHKDRVTSYDLKLKNLIKRKQKKKELKRMRKEKKVKSEVSQVPEIEIKPEDGYIGNEKATEYDSFPNQNNENQPSNTEDKKDIKLVENENGCNNTAQNLAKIYKCFACKKQFTLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLSRHNKRIHLAIRFQCRICYRFFARFENLTVHFDKKHSEDKLEGEPYDYNAILPYLKELEEELKQKSQTEVKPNTDNLWDMIGEVIPQNEDPGQEKKSEDLLAPKEEDSTKDDDKEVNTEVQIEEVKVDPPDIEIKKEVEDDSDMEGCETGNGDKDDSDDVKDEGNSDEDYFPSNTWAVSPKSESPPSPQKPKGNHPLKCSVCEKTVSTASYLRIHMRTHTGERPYKCYICNRGFITSSKMHRHVLTHEESWAADDEKGKKEGIKMDPDVEESTDTKALIKKAKAKFNKKAGKASVYKSRPHACEYCQKKFLHLETLQVHKKSHEGEMLVLKCNFCLEVMADSEALKQHEATHDGPKPYLCTICNKGYKKKETMVYHRKHHKSDREFICNICSKSFNAACKLQRHIVSHSTDKFVLRYECPVCAHMFHTKYHIQMHLSTHQKEGLIFEENRNEILAMVLQNARKIPKNNDGSSKLTELVPSDERSRVCNICGEMFQHFYYLEEHLKSHGSKIAVEDLNKDEIKKHVCEVCNKSFKLHYYLKLHSFTHTKEKPHICQQCGKGFITRGKLKRHLETHTGLKRYQCHICYKFFTRTSYLRIHVRTIHGTQDYNFHSNKVYNNLDMDIPMQDNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -