Mnit014345.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421426.1:10069019-10070449[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.6e-07 3.3e-05 24.9 1.1 2 23 164 185 163 185 0.98 2 11 1.5e-06 0.00013 23.0 0.7 1 23 191 214 191 214 0.96 3 11 1.9e-06 0.00017 22.7 0.6 1 23 222 244 222 244 0.98 4 11 9.7e-05 0.0087 17.3 0.9 1 23 250 272 250 272 0.98 5 11 0.00034 0.03 15.6 1.5 1 23 278 300 278 300 0.96 6 11 1e-05 0.0009 20.4 2.6 1 23 307 329 307 329 0.98 7 11 1.5e-06 0.00014 23.0 0.5 1 23 335 358 335 358 0.96 8 11 8.2 7.3e+02 1.8 0.1 3 11 365 373 364 382 0.77 9 11 0.037 3.4 9.2 3.7 2 23 389 411 388 411 0.94 10 11 0.0061 0.55 11.6 0.0 1 23 417 442 417 442 0.95 11 11 0.00021 0.019 16.2 0.7 1 23 448 471 448 471 0.92
Sequence Information
- Coding Sequence
- ATGGATCCTAACTTGTGCCGAATTTGTTGTAACAGTACTGGTAATGCAAATATTTTTGACTCCGAGTCTGCAGGCATACTTTtgagtaaaaaaattatgtactgCTGTGTTAACGTTCGTCTATCTAAAGATGATGGGCTGCCATCAAATATATGCTTTAATTGCGAAGAAGAGCTTACTACAGCTTaccaatttatattaaaatgtgaaACTACAGACAGAAATCTGCGATCTCAAAAACTATTTACAGGTGCACCTAAAACCCATTTTAATGACGATCCTGTACCTAAAATAGAAGTTAAAACTGAAGGATATAACTCCGATGAAGACCATTTATTTGACATGGATTCTAATGATGAATTTGATATTCCACTTGCATCAATCACCCAAGATGTCAAAAGTGAACACACCAAAATTAAAAGCCGCCCAAGCTCAAGAAGGgcgcaaaagaaaaaaaagaggcACAAATATAAAGATGCAGGGCCCAGTAAATGCTCAATATGCAATCGCAGCTTTCAAAATCCTTCAACACTGTTTGCACACATGCGCTCGCACAGTAATGAAAAGCCTTTTCAATGTCCCTCATGTGATAAAAGTTACAAAGACCCGGGTAGTTTAAAAAGGCATACAGATCGCAATCACTTAGATAAAAGAGAGAGGAAGTTTGTTTGTGAAACATGTGGAAAAGGATTTTATTCAAAGACTGATGTAGTCACTCACATGCGGACTCATACTGGAGAAACTCCATACACTTGCTCAGAATGTGCGTCTAGCTTCACACAACTGAGCTCACTTATCAGAcacaaaattaaacatacaGGCGAAAAGTCTCATGAGTGTCaaagttgtataaaaaaatttagcACCAAGGATCAACTCAATGCTCATTTACTCGTGCACACAGAAACAAAAaagcaatattcatgttctattTGTAATGTCctattcaaatacaaatacaatttaagAAAGCATCTGAAAATGCATAGTGAACCAACTCGCTTTGTCTGCAACTATTGTGGTcgcatttttaaattaaaaggcAATCTGAAAAGTCATATTGACAGAGTACACTCAGAGAAGTCTGGTTACTGTAATATTTGTAGTAAGATTGTGTCGAACATTGAAGTCCATATGTGGAGACATACAGGACAGAGGCCTTTGAAATGTGAACATTGCACCAGCAGTTTTTATGAACTAAAAGCCCTTGCACACCACATGAACTTTCGTCACAAACATACAGATAAATTCAAATGTTCAGTTGAAGGCTGTCCCAAAGCTTTTCCTTCTCAGCCAATGTTGGACTATCATGTTGCCAAGTTACATGAAGGTTGTTTTAAATTTCCATGTGATAAATGCTCTAGGGGTTTTTATAGAAAGAATGATCTGGCTCGTCATAAAATTGGCACTCACAAAGAAAAGCttcaataa
- Protein Sequence
- MDPNLCRICCNSTGNANIFDSESAGILLSKKIMYCCVNVRLSKDDGLPSNICFNCEEELTTAYQFILKCETTDRNLRSQKLFTGAPKTHFNDDPVPKIEVKTEGYNSDEDHLFDMDSNDEFDIPLASITQDVKSEHTKIKSRPSSRRAQKKKKRHKYKDAGPSKCSICNRSFQNPSTLFAHMRSHSNEKPFQCPSCDKSYKDPGSLKRHTDRNHLDKRERKFVCETCGKGFYSKTDVVTHMRTHTGETPYTCSECASSFTQLSSLIRHKIKHTGEKSHECQSCIKKFSTKDQLNAHLLVHTETKKQYSCSICNVLFKYKYNLRKHLKMHSEPTRFVCNYCGRIFKLKGNLKSHIDRVHSEKSGYCNICSKIVSNIEVHMWRHTGQRPLKCEHCTSSFYELKALAHHMNFRHKHTDKFKCSVEGCPKAFPSQPMLDYHVAKLHEGCFKFPCDKCSRGFYRKNDLARHKIGTHKEKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -