Mnit025891.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421440.1:874506-892363[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.022 2 9.9 0.9 1 23 364 387 364 387 0.97 2 20 0.00039 0.035 15.4 0.8 1 23 394 416 394 416 0.98 3 20 0.15 14 7.3 2.7 1 21 420 440 420 442 0.91 4 20 0.0078 0.7 11.3 3.6 1 23 446 469 446 469 0.97 5 20 0.032 2.9 9.4 0.1 3 21 475 493 474 494 0.93 6 20 0.16 14 7.2 0.7 1 20 504 523 504 525 0.92 7 20 0.01 0.94 10.9 0.2 3 21 532 550 531 551 0.94 8 20 4.7e-05 0.0042 18.3 1.7 1 23 753 776 753 776 0.97 9 20 0.037 3.3 9.2 0.1 2 23 784 805 784 805 0.94 10 20 0.043 3.9 9.0 0.9 1 23 809 831 809 831 0.94 11 20 0.17 15 7.1 1.4 3 17 858 872 857 879 0.79 12 20 0.0042 0.38 12.1 0.1 1 19 888 906 888 908 0.96 13 20 0.085 7.6 8.0 0.1 2 20 915 933 914 933 0.94 14 20 0.013 1.2 10.6 0.1 3 20 948 965 947 967 0.92 15 20 0.0034 0.31 12.4 0.1 2 23 977 999 976 999 0.92 16 20 0.00056 0.05 14.9 0.5 1 23 1004 1027 1004 1027 0.92 17 20 0.00025 0.022 16.0 3.5 1 23 1157 1179 1157 1179 0.99 18 20 0.00015 0.013 16.7 1.3 1 23 1185 1207 1185 1207 0.98 19 20 0.00036 0.032 15.5 2.8 1 23 1213 1235 1213 1235 0.97 20 20 2.9e-05 0.0026 18.9 2.1 1 23 1241 1264 1241 1264 0.97
Sequence Information
- Coding Sequence
- ATGGCTCCTCATTTGTTAGCTTGTCGAGGGTGTTTGTCTACAAATAGGAAGCTCTATTTCATTAATTCTCTCGGACTTTCTCAATCTTTCACAACATTACTAGCAGGATCTTCGACTGTGAACAATGTTATAGACCTGCAATATCTCTGCACATTCTGTCTGACGCTTCTAAAGAAGTATAACAACTTCAGGGAAACATGTCTGAGGTCCCAGATCCTACTGAACCAGCTCGAGGTCGATGTAGCACAGGTTACAACTGGCGTAATAGCATCTGTAGATCGAGATTTCTACAAATTAGACCTAGATTTAGTAACAGCAGAAATCAACATAGTTAACtgtgacgatgatgatgaagataatgaGATATTGGCagtggaagaagaagaagacgaaGAAAAAAAGCTAGAACAAACTGAAATTGCACCTGAAGTTGAAGATATTGTGTATTTAGAAACAGAATATCTAGAAAATGATGAAGAACATACTGAAACGATTAAGGAAGAACAGGTGAAGCTTAAAGTAGAAATGATAGAAGGTGATGAATTAAACGAGGTTCAAGAAGACAGTCTGTATGAGAATGTGGTCACACAAATCACAGTACCTGAGAACGCTACAATACTCAACAGGCAATTGGCTGATGAAGACGTTATAACACCTTTCAAGAAACATACAAATTCTGATGACTTTGCAAAAATAACCAAAATAAAGCTTCCAATTAAGGAAACAGATCAGATAACAGAAAATGTGTCCGTAAAGAAAGTATCTTTCGCTGCAGATGTTAAAAAATTAAGCTACACAAACGTAAAGAAGTTAATGAAGGAAGCGgctaatgttaatttaaacaaagACATAATTACTATAGAAGATTATGTTCAAGCTACAGCCAAAACTCAACTGGCAACCAAAAAAGTAGCCAACAAGGCAGCAACAGCCACTACCAATGAAATGAAacagatgtttaaaagaaaagttGATAACGATTTAAATTTTTCATCAAAATACAGCATGAAAGTGTTTAAACTTACAAGAATTCAACAATTAGAGGAGTTTAATCGTAGACGTGACGCTCCAAAATATTTAGAATCATCCTTTCAATGCACCGATTGTTTTATAGGCTTCAGTTGTCCGGAAAAACTTAATTCGCACATTTTAAGCGTCCACGATGTAAGAATAGGGATGTTTGTGTGTGAATTTTGCAAAATAAGATTCGAGAAGCTCGATCAACTATCGAATCACATGGATACACATAGGTACAAGTTTAAGTGCAAGCTATGCGACTTTTTCAGCAGAAACAGATCGAACGCTATGAGACATTCCTACGATCATCAAACGGCGTTCGCTTGTGCACATTGTGATCAAAAATTCCAAAACAAGACCCCGTTTTTGAGACATCTTCGCAAGTTTCATACTTTTGAAGCCTTCTGCAATATTTGTGGTGAACAATTCAACGATAACCGCAGCTGGGTTTTGCATAGGAAGATATGTAACGCTGATATCAAGACTTTAGAGTTCACGTGTACAAATTGTGGTGTGTGCTTTTTGAACAAGAAGGCTTTGGATGTGCATACGATACAGGGTTGCAGTGAAAAAGCGTGCCTGCATTGTGGAGTGGGATTTAAGTCCAATAAAGAACTGCTGGAGCATTTACAAAGGAAACAGCAGAAAGCTTGTGGAAAATCTGCTGATGGTAGTGTAGAGTTGGAGgaaACAGAACCAATGGAGACAGATGCACCAGAATACTTGAGCCAATATGAACAAGAGGCAGCGGAGTCCATTAAACACATGATCGAACAGAAACATAGAGATATGGACGTGGTTATTGAGACTGAGGAGTACGAGGCTTGTGAAGCTGATGTTGAGGAGACTGTCTCAGAAAACGTAGAAACACTCGAATCAGAAAACTCAGTGGAATTCCTGAACAGAGAGGAAATCCAAGCAGCGGAATCCATCAAGCACATCCTTAAGCAAAAAGACAGCTCACTTAagttaaagtgtttaaaagatcTGATCAAAAACAACTCAGAATTCAGCGATATAGACTCATTAGTTAATGACAATGTTGTTGATTTGATAACTTTAGAAGACAACGCTAAAAATCCAGCAATGAACGAGGTAGATGATATTAGCATTCTCAGTTGCATCGATGAACAAGAGTTCACAAGGAACTACAACATGACAGTCTCAAAACAGACTAAAGAAGAACAGCTTTTAGAAATGATCAATCGTCGGTTCTCACCGAACATGCTTGTATCAAAATTCAGATGCAAGGAGTGCTTCAAAAGCTTCAATAGTGAGGAGAAATTAGAAAATCATATAAAACTGAGCCACGATCCAGAGTTAGGTGACAACGTTTGCCCGTACTGCGCTGTGAGATTCAAAACGAAATGGGCATTGAGCGGTCATTTAGTCAATCATAAATACAAGTTTACTTGCAACGTTTGTGACTTTACAACTAAACGTAAGAAAGCAGCACAAATTCACAGTACAGTGCATTCCGTCCCCAACGTGTATAAAGACAAAAGCAATAAGAAAGATGAACCAGGAACGGATAAGTTGGAATGTAATACGTGGTGTGATTTATGTGGAAAAACGTTCAGTAGCAAATGGGGCATGCATTTCCATAAAAGTCGTATGCATGTGGAATTGTTAGCCGGTTCCACTTACAGCTGTGTCAAATGTGGCAAAGCATTCATAACAGATGAAGCGTTAAAAGTGCATAATAGTGAAAAGTGTTCCGAACAACCGTGTCTACATTGTGGGGTTGGTTTCTCTAATGTGTTCTTGCTGTTAAGACATTTATGGGAGTTTCATCGGAAGAACTCTTTAAGTAAAAGTGTGGACTGTGAGACGTGTGGGACCTCGTTCCGTAGTGCTAGAGCCATGGCGAGACATTCTAAGTTATCTAACGGTGTGTGTATTGGACTTAGTCCTTGTGACATGTGCGGGGTTAACTTTGATACACCTGAACTGTTGAAACAACACAAGTTGGAGACGCATGTGGAAAAGAAGTACAGGTGTGATGAGTGCGGCAGATCCTACACAACAGCCTTTAACTTTGGCCTACACTACGACAACGTACACGTAAAAAAACCGCGAAAACCACGCAAATATAGAGAACCAAGAAACGAGGCAAAGATATGGGGTGTCGCAGCTGCTGACGGTACTCCCATAGACATTGGAGTAACGTCAGACGATGGTAACACTATCATACCAGAAACATCTGAATTTATACCAGATCTTGGTGTAAATGTAGCGGATATCACCTCAGATTTTATTGAAACTGAAGATATGACTGGTTTGAAGGTTAATATAACTCAGATTACGCAGAAGGGTGAAGGGAATGTGGTGTATGAAGGTAATACTGAGGTAGAATTGCCAAATACAACTTTTGGAACGGAGCAAGACAGTATTGGAATAGTGTACAATATACAGCAGACTTGTTCCATAGCTGAAGCGAGGGAGAGACGTTATTCGTGTCAATATTGTGGGAAGTTGTGTAAGAATAGTGTACTATTGAAGTACCACGTGAGAACGCACACTGGGGAGAAACCGCACCAGTGTCCGACATGCCTTAAATTCTTCAGGGTGCCTTTGCTGTTGCAgACTCATATGCGAGTCCACACCGGCGAGAGGCCTCACAGCTGCGACTTCTGTTCCAAGGCCTTCAAGTCGAGAACAGCACTTTCAAGACATCGATTGGTACACACAGGGCAAAGGCTACACGTATGTGAAATTTGCTACAAATCCTTCAAAACATCGACCGATGTGAAAACGCACATCAAAACCGTCCACATGAAGATACCTGGCCCCAAACGCATCAGGCCTTCGAGGACTAAGAAGAAGCTACTGGAGTATCAGGAGTCTGTAGAGTGA
- Protein Sequence
- MAPHLLACRGCLSTNRKLYFINSLGLSQSFTTLLAGSSTVNNVIDLQYLCTFCLTLLKKYNNFRETCLRSQILLNQLEVDVAQVTTGVIASVDRDFYKLDLDLVTAEINIVNCDDDDEDNEILAVEEEEDEEKKLEQTEIAPEVEDIVYLETEYLENDEEHTETIKEEQVKLKVEMIEGDELNEVQEDSLYENVVTQITVPENATILNRQLADEDVITPFKKHTNSDDFAKITKIKLPIKETDQITENVSVKKVSFAADVKKLSYTNVKKLMKEAANVNLNKDIITIEDYVQATAKTQLATKKVANKAATATTNEMKQMFKRKVDNDLNFSSKYSMKVFKLTRIQQLEEFNRRRDAPKYLESSFQCTDCFIGFSCPEKLNSHILSVHDVRIGMFVCEFCKIRFEKLDQLSNHMDTHRYKFKCKLCDFFSRNRSNAMRHSYDHQTAFACAHCDQKFQNKTPFLRHLRKFHTFEAFCNICGEQFNDNRSWVLHRKICNADIKTLEFTCTNCGVCFLNKKALDVHTIQGCSEKACLHCGVGFKSNKELLEHLQRKQQKACGKSADGSVELEETEPMETDAPEYLSQYEQEAAESIKHMIEQKHRDMDVVIETEEYEACEADVEETVSENVETLESENSVEFLNREEIQAAESIKHILKQKDSSLKLKCLKDLIKNNSEFSDIDSLVNDNVVDLITLEDNAKNPAMNEVDDISILSCIDEQEFTRNYNMTVSKQTKEEQLLEMINRRFSPNMLVSKFRCKECFKSFNSEEKLENHIKLSHDPELGDNVCPYCAVRFKTKWALSGHLVNHKYKFTCNVCDFTTKRKKAAQIHSTVHSVPNVYKDKSNKKDEPGTDKLECNTWCDLCGKTFSSKWGMHFHKSRMHVELLAGSTYSCVKCGKAFITDEALKVHNSEKCSEQPCLHCGVGFSNVFLLLRHLWEFHRKNSLSKSVDCETCGTSFRSARAMARHSKLSNGVCIGLSPCDMCGVNFDTPELLKQHKLETHVEKKYRCDECGRSYTTAFNFGLHYDNVHVKKPRKPRKYREPRNEAKIWGVAAADGTPIDIGVTSDDGNTIIPETSEFIPDLGVNVADITSDFIETEDMTGLKVNITQITQKGEGNVVYEGNTEVELPNTTFGTEQDSIGIVYNIQQTCSIAEARERRYSCQYCGKLCKNSVLLKYHVRTHTGEKPHQCPTCLKFFRVPLLLQTHMRVHTGERPHSCDFCSKAFKSRTALSRHRLVHTGQRLHVCEICYKSFKTSTDVKTHIKTVHMKIPGPKRIRPSRTKKKLLEYQESVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -