Mnit009331.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421421.1:6217068-6228628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00039 0.035 15.4 2.1 1 23 206 229 206 229 0.96 2 12 0.19 17 6.9 1.0 2 23 238 259 238 259 0.94 3 12 1.3e-05 0.0012 20.1 1.6 2 23 265 286 264 286 0.97 4 12 1.6e-06 0.00015 22.9 0.7 1 23 292 314 292 314 0.98 5 12 4.2e-06 0.00038 21.6 0.5 3 23 325 345 324 345 0.98 6 12 0.00073 0.066 14.5 0.0 1 23 351 373 351 373 0.96 7 12 0.00063 0.057 14.7 6.7 1 23 379 401 379 401 0.98 8 12 1.6e-08 1.4e-06 29.2 0.5 1 23 407 429 407 429 0.99 9 12 9.4e-07 8.5e-05 23.6 0.7 1 23 435 457 435 457 0.98 10 12 0.0035 0.32 12.4 0.1 3 23 465 484 463 484 0.96 11 12 0.0003 0.027 15.8 0.5 1 23 490 512 490 512 0.95 12 12 1.7e-05 0.0016 19.7 2.7 1 23 518 540 518 540 0.98
Sequence Information
- Coding Sequence
- ATGGATGTGCTTAATTCTACAGAATGCTATGAtaacaaaattgaaataaaaattgaagAAACTAATGATTTCACACCATTTTCTCACAATGATTTAGAAAATGTATGTAGAGTATGTCTATCAAGTAATAAAACATTGGTCTCGCTTCAATGTAAGGAACATGACAGTGAGATATGCTTGAAAGATATGTTAAAAGTATTCATACCTactcaaGTGTCTGCAGAAATGACATTCCCAAAAGAAATTTGTGTCCAGTGTCAAAATGAGCTTATCATAAGTTATAATTTCAAAGTTAAATGTGAAAGGTCTGACAATTTCTTTAATTCAGTTATTCAGTGTCAATCAAGCCTTCCTAGTACCATGGAATCAAGtaaagAAACTAAGGACAAAACTGTGGGGAAtaacataaattacaaaattaccaAAGCAATACATTCAGATGAAGaaactgAAGTACAATATTTAGATGAATTTGATGACAGTGAGAATGATTCTACAGCCGTGTGTATTGTTCAAGAGTCAAAAAATTCaaaagAACTGAACGTCACTATTACTGattcACAGGCATTCTTAGAAAAGACAGTTAGAGTTAATGCTCGCCTTAATCAAACAGTCTATAACTGCAATATCTGCTcaaagaattttaaaaagttgAAAAGATTAAAAGCACATTTACAACTGAATCATAATGAGAGTGAAAACCAGTCTAACCGTTGTGGACAGTGCAAGGAGATCTTTACCTGCCAGTCTGACTTGGAGTTGCATTCTGCCATACATCAGTCAGGACCATGGGAATGCAAAGTGTGCTCCAAAGGgtttaaaaCTAAAGCAATGTTCAGGCGGCACCTACAAAGGCACATGGAGTCCAAGCGTTTCAAGTGCGAGGTGTGTCAGAAGTCTTTCACAGAGTTGTACGCTCTGCGCCGACACGCCCGCGTGCACACTGGCGAAAAGATCGAGAAGAAACGGGCCTGTTCCATTTGTGATAAAagATTCGTTTCTAACTACGAGCTGGAAGTTCACAAGCGCAGACACACGGGCGCAAGACCGTTCGCGTGCGTCATTTGCGACCGCACGTTTGGGAGCGCACGCCTCCTTGCGTCCCATGCGCAGGTGCATTCGGACCGGAAACCTTACGCCTGCGAATATTGCGACAGACGATTTCGGCATGAATCTACCCGCAACACACACCACCGCACGCACACGGGAGAAAAGCCATATGTGTGCGCAACTTGCGGCAAAACCTTCATACAAAACTCTAACCTCCGTCTGCATATCAGGACTCATACGGgaGAAAAACCATACTCATGCGATAAGTGTGAGAAGAAATTCACATCCGGATCGGCGCTGAAGATTCATATGAGAGTGCACACTGGGGAAAAGCCCTATGGCTGTGATGTTTGCGGTAAAAGGTTTGCTCGTATGGATCTAGGCGCGCATATGCGCATGCATTCCGGCGAGCGTCCTCACGCGTGCAGCGCGTGTCCCAAGACGTTCGTGAACGCGGCGCGTCTGCGGGAACATCGCCGAGTGCACACAgGTGAGAAGCCGTTTGAGTGCGCAACTTGTACACAGTCATTTGGAACGAAAACTCATCTAATCAAGCATATAAAAACACACCAGTTAAGGAAAAATACAGACAGAAGAGCCTATTACTTCGTTCGCCAAATAGAATCGTCgcaactattaaaaataaacgaaaaacCAACTAAACCTCAAACTCAAATAACtgaaacttttaataaatacaacaaGGATATTTACTACAAGTTGAATCAGAATGTTGAAAATATGATTAATCATCacacaattattaaaaattctaCCTTGAATTTGTCAAATAAAGTACCTTTGCATGTCATTGGTGAAATCATACTGCAAGACGAAGAAGTACTAGTAGTAGATAATAGTCAAAAGCCagagtaa
- Protein Sequence
- MDVLNSTECYDNKIEIKIEETNDFTPFSHNDLENVCRVCLSSNKTLVSLQCKEHDSEICLKDMLKVFIPTQVSAEMTFPKEICVQCQNELIISYNFKVKCERSDNFFNSVIQCQSSLPSTMESSKETKDKTVGNNINYKITKAIHSDEETEVQYLDEFDDSENDSTAVCIVQESKNSKELNVTITDSQAFLEKTVRVNARLNQTVYNCNICSKNFKKLKRLKAHLQLNHNESENQSNRCGQCKEIFTCQSDLELHSAIHQSGPWECKVCSKGFKTKAMFRRHLQRHMESKRFKCEVCQKSFTELYALRRHARVHTGEKIEKKRACSICDKRFVSNYELEVHKRRHTGARPFACVICDRTFGSARLLASHAQVHSDRKPYACEYCDRRFRHESTRNTHHRTHTGEKPYVCATCGKTFIQNSNLRLHIRTHTGEKPYSCDKCEKKFTSGSALKIHMRVHTGEKPYGCDVCGKRFARMDLGAHMRMHSGERPHACSACPKTFVNAARLREHRRVHTGEKPFECATCTQSFGTKTHLIKHIKTHQLRKNTDRRAYYFVRQIESSQLLKINEKPTKPQTQITETFNKYNKDIYYKLNQNVENMINHHTIIKNSTLNLSNKVPLHVIGEIILQDEEVLVVDNSQKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -