Mnit027925.2
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421442.1:4788556-4805133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.021 1.9 10.0 1.6 1 23 245 268 245 268 0.93 2 33 0.025 2.3 9.7 0.4 5 23 296 315 295 315 0.96 3 33 0.046 4.1 8.9 2.4 1 23 337 359 337 359 0.97 4 33 0.014 1.2 10.5 0.2 1 23 363 385 363 385 0.95 5 33 0.15 14 7.3 0.6 1 23 389 412 389 412 0.80 6 33 0.57 51 5.4 2.9 2 23 419 441 418 441 0.90 7 33 0.0002 0.018 16.3 0.2 1 23 448 471 448 471 0.96 8 33 0.00059 0.053 14.8 4.5 1 23 477 499 477 499 0.98 9 33 0.0013 0.11 13.8 1.5 1 21 505 525 505 526 0.95 10 33 0.16 14 7.2 0.8 1 23 563 585 563 585 0.95 11 33 0.45 40 5.8 0.2 3 23 615 636 613 636 0.95 12 33 0.0068 0.62 11.5 0.1 3 23 658 679 656 679 0.96 13 33 0.021 1.9 9.9 4.7 2 23 685 707 684 707 0.94 14 33 0.061 5.5 8.5 0.8 1 23 712 735 712 735 0.95 15 33 0.68 61 5.2 0.7 2 23 738 760 737 760 0.94 16 33 0.056 5.1 8.6 2.4 2 22 767 787 766 787 0.94 17 33 0.00045 0.041 15.2 0.8 1 23 844 867 844 867 0.92 18 33 1.5 1.3e+02 4.1 0.1 3 23 896 917 894 917 0.93 19 33 1.1 99 4.5 3.0 1 23 989 1011 989 1011 0.92 20 33 0.5 45 5.6 2.4 3 23 1041 1062 1039 1062 0.94 21 33 0.004 0.36 12.2 0.3 2 23 1083 1105 1082 1105 0.94 22 33 0.00074 0.067 14.5 1.9 1 23 1113 1136 1113 1136 0.92 23 33 0.0031 0.28 12.6 3.8 1 23 1140 1163 1140 1164 0.93 24 33 1.3 1.2e+02 4.3 0.2 3 23 1167 1188 1165 1188 0.94 25 33 0.0015 0.13 13.6 1.8 1 20 1194 1213 1194 1215 0.94 26 33 0.043 3.9 9.0 1.0 1 23 1266 1289 1266 1289 0.97 27 33 0.0019 0.17 13.3 0.1 2 23 1316 1338 1315 1338 0.91 28 33 0.4 36 5.9 0.3 1 19 1360 1378 1360 1383 0.95 29 33 0.00061 0.055 14.8 0.1 3 23 1390 1411 1388 1411 0.91 30 33 0.00098 0.088 14.1 0.4 1 23 1416 1439 1416 1439 0.91 31 33 0.00045 0.041 15.2 0.3 1 23 1471 1494 1471 1494 0.98 32 33 0.037 3.4 9.2 0.3 2 23 1501 1522 1501 1522 0.97 33 33 0.026 2.3 9.7 1.1 1 23 1528 1550 1528 1550 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGACGAGATAGTGTTGAAAGAGAGCCCGGGCTTATGCCGGTGCTGTCTATCGGAAGGATGTTACAAAGACATGGGATCCGAATATTCCTGGATGAGTGAAACCGAAGTCTATGCTGATATGCTTTTGGAATGTTTTGATATTAGTATATCCCAACACAATGAAGGCCCCAACGGACCTAACCGGCTCATATGCGAGGTGTGCATCACACGCTTACGAGATGCCTGCTACTTCAAGAAACAGGTGGTGGACTGTGAGAAGAAGTTCGTCGACATGGTGGGCAGAGGGCAGTTTTCTTCTAAAGTAATGGTTTATCAACCTAAAATGGAGACAACAGTGGATTTGGAAGCGGTTGAAGAAGCAGGACCCGTTGAATATCTTGAGGATGACATTGAATTTGATGCAGAAGACATGGAAACCCCAGATGACCCAGAACCAACAGTTTCTAACGTGACTGCAGAGCCCCTAGCCACCAGAGGAAAGAGGGGAAGACCGAGGAAGTCTACCATAGACAAACCGGACAAGAAGAAAGTTAAAGCGGAACCAAAAGCCAAGTCTGTGAAGGCACTAGTAAAAGgTACTAAACGCGCAGACGTGGAAACGTTCGAGGCAACAAGTAAGTCCTCAACAATATCAGCTATAAAGCGAAATCGTCTCATGAAGAGAAACGCTATGATCATCATAGAAAACTCTACTGTTACACCTTTCAAATGGCACAGACAGAATTATCTATGTTTCTTCTGTCATCTACCCTTCAGAGATCCGCAAACGTTAAAAGACCATACCAAAGCTGATCACAGAACGTCAAATTTAAAATCTGCTGTTGAATACTTGAGAAGAGATGAGAAGGTCAAAATCGAAGTATCTATTCTGGATTGCAAATGCGGTTTACGTTTTGAGGATCTGGATAAGCTTATAAAGCATTTGAAATCCGGACATGACTTCAAGTTTACCGATGAATGCGGCTATGGTTTGGTACCATATAGGTTGACAGGAGATCCTTTCCATTGCGCAGTATGTAAAGAGCAGTTCCAATATTTCGTGAAACTCAATCAGCATATGAACGTACATTACGGATGTTACGTCTGTGATGCTTGTGGAAAATCCTTTCTCAGTCAGGATAGACTTAGGGCACATGCTTTCAGCCACGGCTCGGGATATAAATGCAACGTTTGTGATCTGTCTTTTGAGTCGTTAACACGAAAGGTTCAACACGAATCTAAGGTCCACAATAGAGAGAGACAGCTGAAATGCTTTTTCTGTCCAGAAACATTTTCTAATTACAATCTTAGAAAGATGCATCACAGTTCTGTTCATAATTTGGAAGCTCCCGAGTTCAAATGTCCCGATTGCGGAAAACCTTTTCAAGTGATGAGTAAAATGAAAGTGCACTTAAAAGAAGTgcatatgaaagaaagaaacttTTCTTGCACAGTGTGCGATCAGAAATTCTTCTCCAAGACTCACGTACAGAAGCATATGATAAAGCATTTTGGAGAGAGAGTGCACCAATGCAATGTTTGTTTGAAGTCTTATGCAAGGAAACAGACACTAAGAGATCACATGCATGTTAAACTGCGAAAATACAAAGGCACCGAATCGTCGTCAATGCGCAGACGAAGAAACCTCCAGTTGTTGTTCAACCATACAACCATAATACCTTTTAAATGGCGAGGGAAGTATCTCTGCTTTTACTGCAGTAAAGATATAACTGAGTATGCAGATTTAAGGAAACACACAAAGGCCCATGGGAATTGCTCAACTAAAGATCATTCGCTTATGGTTCTCAAAGGAGGTCAGAATATGGAGATAAAGCTAGATGTGTCTGAAATAGCTTGCGAGATTTGTCAGGAACCGTTCCATTCCTTCAACGAAATAATAAGTCATCTTCAAATAAAACATAAGCTTGAATATGACAAAGATGTCGAAATGGCTACGGAAGAGTTTAGACTGGCTGATCTCGCTTGTTTGCTTTGTGGAGAAAAGTTTGCTTACTTCGGTTATTTAGTCTCGCATATCAACACGACCCATCCTAAGAATTGCCTTATTTGTGATAAATGTAATCAAAAGTTCAACAAGAAACGAGATTTATTTTCTCACCACAAAAACTATCACCGAGAAGGGGGCTATCAATGTGAGCTGTGTCCTCAAAACTTCAATTCCCTAAACATTTTACGTTCGCATAGAAATAATCGCCATTTCTCGAAATGCAACATTTGCCAGTTGAAACTACAGACTTCCGCAATGAAACAGAAACATATGGAATTGGAGCATCCGGATGATGGTTCATTGCAGTGCGACAATTGTTTCAAAGACTTCCACACCAAGCAAGGTCTTAAAATGCACACGCGGAAATGCAAAGGCGACGATGAATCATTCGAACTAGCAATTAAAAGGGAAGATGATATTGAAGACGATTATCAGGAACCGATTAAACGTCCTAGTGTTAAGCAAATTAGGGAAAATGTTGTGATAGTAATTAACATGTCTACTGCGAtaccatttaatttttttaagaataagttTAACTGCTTTTATTGCTCTAAAGATTTTACTGATTCTGATTCTCTGCGTGAGCACACGGTGATAGAACATCCTGTTTGTGATGTGAAGCAGAAATGTATAAGAAAATGCAGGGAGTCTGTGACGTGTGTTAAAATAGACATATCAACACTAGCATGTAAAATTTGCTTTGAAACTATGGACAATCTCGATAGTTTAGTAGACCATTTAATTTCCAAACACGAAGCTAATTATGATAAGTCAATAACCACATGTTTGCAACCCTATAGATTAATTAAAGAACATATGGCATGTCCAAATTGTACGGGTGAGGTGTTTAGATTCTTCGATGAAAATGAGCCGACAAACGGGCACAAGGCAAATAGAATAATGCGGAAGAACCTTCACATATTGCTGAACAACACAAATATGATACCGTTTAAATTGCGCGGCAAATTTCTCTGTTTCTATTGCGGGTGTGACGTTCACGATTATGAGAACCTGAAGAATCACACAGAAGGCCACGGCCAATGTGCAGAAAATGAACCGGCTCTCAAACAAGTAAAGGGTCGGAATGCTGAAGTCAAATTGGACGTTTCTAAAGGCATAAACTGCCTTATATGCCTTAAAGATTTCAGCGATATCAGTGATATCTGCCACCATTTGAAATTGAAACATAACTTACCCTACAACGAAAAAGTCCAGTTCAATATGACCACAATCAGGCTTCTCGACTTGAAATGTCAATACTGTGATCTGATCTTTGATAACGTTTATAAACTCATAAGGCACGGCAATTCTGATCATGCAACTAGGAATGCGCAAACATTCTCTTGTTCAGAGTGCGACAAAGTGTTTAGTAAAGTTAGGGATCTTCAATCTCACAAGTATTATTACCATAGGGATCAATACAACTGCAAGAAATGcaatttaacattttcaactaaAGATGCGTACCTTAAGCATAACTCGAAGCCACATCATTGGTTTTGCGATGTATGCTTGGAAAGTTTCGCCACAGATCTTAAAAGACGTCAGCATATGAGAGCTGAGCACTTCGACAAGGGTGAATTTAAATGTGGCTATTGTCATAGAACTTTTAGTCATAAAGTACCCTTATCCAACCATGTCGGCACGTGCAAAGCTAAACTTAGTCACAATAAGTACCGGTCTACTGCCAAACTGGATGTCAATAACAGAAAGCAGCTCGCGTctcaaataagaaataatttaatgacCATAGTAAATATGACTACGGCGATTCCATTTAAGTATTATGCTTGTAATTTTCAATGTTTCTTCTGCATCGAAAAGTTTTCTCTGGCTAGTGATCTTAGGCAACATACCTTGACGCTACATTACTCTTCCCCTGGCGTTGATAACAAATGTTTTAGGCGACTAGATGGTGTAGAATTTAAATTCGACACGTTTTCACTGTCCTGCAAAGTTTGTGACGAATCATTCAACAGTATAGATGCGTTGACAAGTCATTTGGTAAATGAACATAAAACTGAATATGACAAGTCGATGGACAATCGATTGGTAGCTTACAAGTTAATAGATAAAGCGTTTCCATGCATGAAATGTGATGGAGTTTTCGAAACTTTTGGCGATTTGTTGAAACATGACGATAAAAATCACATGGCAAATAAGTTGATTTGTATTTACTGCGGTAAAGCATTTAGGAACAACGCTGCCTTTAATGTACATATGGCGGTAAAACACAACCCGGATGGGTACAAGTGTAATGAATGCAACCTGGTTTTCAATAGTTATTACCTGTTACGTGGACATTTAGGCCAAGTCCATGGCTCGATAAAAGTGAAATGCTCGTTGTGTTCAGACACTTTTATTTCCCGTTTTATTATGCGAAAGCACATGGTAAATGTTCACAAAAAAGGATTCAAATGTCCCCAGTGTCCGGCTATGTTCACGGAACAGTTTTACGTTCAAGAACACATACGTCGCATCCATCTTAATGAAAAGAACGCACAGTGCGCAATTTGTTCGGAACGATTTTTCGACGGCCGTCTCTTAAAAATTCATATGGTCAAACACGCTGGTGAAAGGAAGTTTGCTTGCAATACTTGCAACAAAAAATTTCTATGGAGAAAAAATTTGGTTGCTCATATGAAATCACATCAAAAACATGTGTAA
- Protein Sequence
- MEFDEIVLKESPGLCRCCLSEGCYKDMGSEYSWMSETEVYADMLLECFDISISQHNEGPNGPNRLICEVCITRLRDACYFKKQVVDCEKKFVDMVGRGQFSSKVMVYQPKMETTVDLEAVEEAGPVEYLEDDIEFDAEDMETPDDPEPTVSNVTAEPLATRGKRGRPRKSTIDKPDKKKVKAEPKAKSVKALVKGTKRADVETFEATSKSSTISAIKRNRLMKRNAMIIIENSTVTPFKWHRQNYLCFFCHLPFRDPQTLKDHTKADHRTSNLKSAVEYLRRDEKVKIEVSILDCKCGLRFEDLDKLIKHLKSGHDFKFTDECGYGLVPYRLTGDPFHCAVCKEQFQYFVKLNQHMNVHYGCYVCDACGKSFLSQDRLRAHAFSHGSGYKCNVCDLSFESLTRKVQHESKVHNRERQLKCFFCPETFSNYNLRKMHHSSVHNLEAPEFKCPDCGKPFQVMSKMKVHLKEVHMKERNFSCTVCDQKFFSKTHVQKHMIKHFGERVHQCNVCLKSYARKQTLRDHMHVKLRKYKGTESSSMRRRRNLQLLFNHTTIIPFKWRGKYLCFYCSKDITEYADLRKHTKAHGNCSTKDHSLMVLKGGQNMEIKLDVSEIACEICQEPFHSFNEIISHLQIKHKLEYDKDVEMATEEFRLADLACLLCGEKFAYFGYLVSHINTTHPKNCLICDKCNQKFNKKRDLFSHHKNYHREGGYQCELCPQNFNSLNILRSHRNNRHFSKCNICQLKLQTSAMKQKHMELEHPDDGSLQCDNCFKDFHTKQGLKMHTRKCKGDDESFELAIKREDDIEDDYQEPIKRPSVKQIRENVVIVINMSTAIPFNFFKNKFNCFYCSKDFTDSDSLREHTVIEHPVCDVKQKCIRKCRESVTCVKIDISTLACKICFETMDNLDSLVDHLISKHEANYDKSITTCLQPYRLIKEHMACPNCTGEVFRFFDENEPTNGHKANRIMRKNLHILLNNTNMIPFKLRGKFLCFYCGCDVHDYENLKNHTEGHGQCAENEPALKQVKGRNAEVKLDVSKGINCLICLKDFSDISDICHHLKLKHNLPYNEKVQFNMTTIRLLDLKCQYCDLIFDNVYKLIRHGNSDHATRNAQTFSCSECDKVFSKVRDLQSHKYYYHRDQYNCKKCNLTFSTKDAYLKHNSKPHHWFCDVCLESFATDLKRRQHMRAEHFDKGEFKCGYCHRTFSHKVPLSNHVGTCKAKLSHNKYRSTAKLDVNNRKQLASQIRNNLMTIVNMTTAIPFKYYACNFQCFFCIEKFSLASDLRQHTLTLHYSSPGVDNKCFRRLDGVEFKFDTFSLSCKVCDESFNSIDALTSHLVNEHKTEYDKSMDNRLVAYKLIDKAFPCMKCDGVFETFGDLLKHDDKNHMANKLICIYCGKAFRNNAAFNVHMAVKHNPDGYKCNECNLVFNSYYLLRGHLGQVHGSIKVKCSLCSDTFISRFIMRKHMVNVHKKGFKCPQCPAMFTEQFYVQEHIRRIHLNEKNAQCAICSERFFDGRLLKIHMVKHAGERKFACNTCNKKFLWRKNLVAHMKSHQKHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -