Mnit004250.2
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421416.1:6281911-6291031[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.058 5.2 8.6 1.4 3 23 691 712 690 712 0.96 2 23 0.4 36 5.9 0.3 1 22 1117 1138 1117 1138 0.95 3 23 4.2 3.8e+02 2.7 0.4 1 22 1179 1200 1179 1202 0.82 4 23 0.32 28 6.2 0.5 2 21 1212 1231 1211 1232 0.94 5 23 0.64 57 5.3 0.1 2 23 1240 1262 1239 1262 0.91 6 23 0.011 1 10.8 0.1 3 23 1283 1304 1281 1304 0.96 7 23 0.00097 0.087 14.2 2.8 1 23 1310 1333 1310 1333 0.95 8 23 0.15 13 7.3 0.0 1 23 1358 1381 1358 1381 0.90 9 23 0.022 2 9.9 3.4 1 23 1386 1408 1386 1408 0.97 10 23 0.0035 0.32 12.4 0.2 1 23 1414 1437 1414 1437 0.97 11 23 0.0012 0.11 13.9 1.3 1 23 1451 1473 1451 1473 0.98 12 23 0.00021 0.018 16.3 1.8 1 23 1524 1547 1524 1547 0.97 13 23 0.00059 0.053 14.8 2.9 1 23 1614 1637 1614 1637 0.96 14 23 0.0013 0.11 13.8 2.1 2 23 1662 1684 1661 1684 0.95 15 23 0.046 4.1 8.9 0.1 2 23 1690 1712 1689 1712 0.94 16 23 0.011 1 10.8 0.2 1 21 1756 1776 1756 1777 0.95 17 23 0.0014 0.12 13.7 0.5 1 23 1787 1809 1787 1809 0.93 18 23 0.00013 0.012 16.9 0.3 2 23 1896 1918 1896 1918 0.93 19 23 1.3e-06 0.00012 23.2 1.3 3 23 1925 1945 1924 1945 0.98 20 23 0.045 4.1 8.9 0.6 1 23 1965 1987 1965 1988 0.93 21 23 0.27 24 6.5 0.0 1 23 2006 2028 2006 2028 0.97 22 23 0.032 2.9 9.4 0.6 1 23 2034 2057 2034 2057 0.95 23 23 0.00029 0.026 15.8 0.4 1 23 2065 2088 2065 2088 0.96
Sequence Information
- Coding Sequence
- atGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTAGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGAGACGGAGCCTCCCGTCCTAGCTTCAAAAATAAAGGATTGTGTCTCAGTTCAGATAAGTGAGAATGACGACCTGCCAACTAATGTCTGCAGGAAATGTGTGGATAATGTCAACAACTGGCATACATTCAAGACAGTATGTGAAAGGACACAAAACAAACTTGAGTTGCTGGTTAAAAAAGATGAAAGCCATCTAGAAGAGataaacataaaaagtGAGCCTTTGTCTGATGAAGCTTATGATGATGGAGTGGTTATTGATACATCATATCTAGACAGTGAGAATGCATCTTCCTCAAACAAAGTCCAGACTGAAGGCCCACCTATCTTGGCATCATTGGGGCTCACACCGAGGAGTGATAAGAAATATGTAGACCCTCGAATGGACTGGCAGCGAGTCCATGCGATATTGGACATGGTTCAAGATGATGATGCGATAGATTCCCTACAGTCCATTGAGGAATGTGACATGCTACAGCAGTCTGCTCATAACTCTGAGTCGGAGTCCGAGCTACAAGAAGTAGACGACATGTATTTAGATTGTAAAATTggatatttatgtaaaaaccgAAAAATGTTATCGAGAAATCCCAAACTATCGCCATCAATGAATAACTCGAAAATCAAAGAGGCTTCTACACTAAGAAAACGAAAGTTAGAAGAACCAAAATCTTGTTTTCTGCCTTTGACTGCATGGCAACTTATGTTTACTGATGATTTGATTGAGCTGATAGTCAATTCTACTaacaacaacattttaaaatcaGGTCATAGTATTGCATCCTCTACAAATGTTGGAGAAATTAAGACTTTAATTGGCATTCTTTATTTACAAGGTGTTATGAGACCTACTCATCAAACACAGGGAGAACTATGGAATAAGGATTTTGGAGTGCCCTGTGTCCGAGGTGCTATGAAACAAGACCGTTTCAGATTTCTTCTTACAAATTTATGCTTTGATACTGGTGATGATGATGGGATTATACAGTTTGATATAATGAAAAGAATGAggaaagtttttgaaatatttgctATGAATTGTAGGGGCTCGTATGAAATCAGTAATACAGCTGTTATTGATGATATCCTAGTTCCAGTATTTGGCCCTTGTCCCTTCCGTtatgaaatgaaaaacaaaCCTCTGGGATGTGGTTTGAAAATGGTCCTTCTGGTTGACTCAAGCAAtttatatatcaataatttgGACATCATTACTGATCCATATTTTGGTCCAAAAGAAATAGTTAATAAGATGGTTCAGCACTTATCTGGAACAGGTAGAACATTAGTAATGGACAGTTGGTATACATCAATGGAGTTATTGAATAAGCTTAAAGATAAACACAAGCTGTTTGCAATTGCAGCTGTTCATCCATCTGATGATATAATACCACCGGCATTTTCTTCAAAGTTCaggaaattaaaaacatttatgacTGGGTTTTTGGATGACGATTTCTTACTAACTTCATTTGTGAACTCAAAGAGAAGATCTGTAAATGTCTTGACGAATgaagcaaaattttataaaagaggATACTCCAATCATACTACAGTTGTTTCTGCATATAGAAAAAATCAATCATCGGTTGAGGTTGTTGATGTGCTTATGCATTACTACACCACTATGCAACACACCAATGACTGGACCATGTCTTTATTCTTCACTTTGTTAAATATTGCTGCGATTAACGCACAAGTGATATGGTCTACTCAAAACACCAGTCGTATTATGAAGCGTCGATCATTCATCATAGATTTGGCTACAAGCCTTATGGAAAAAGAGAGACCCTTGTCACCAACTGATGAGTTACTTGGTATGGAAAGCGAAAAAGATGACGAGGACGAAGACGAAGAGGCGAATGAACCAGTTCGGACATTTGCAAAGGTTCCCAATATGCCTGAGGTGTCTATTACAGTGATGAGACCCTCGGGCGAGACGTTACATGCCCGTCAAGGTATACAACAACTTGCTTCGAAAGATTGCCTTGTGTGCAGCCGTTCCTACAGGTACTCTCACAACGCCAGGCGCCACGAACTCACAGCTCACGGGTTTGATAGATACACAAACAAAGTTATGAAAAAGAATCAACACAATCGCATGCATCCCAAATTACGACCGAATCCGTTTAACCCAAAAGCGCGGCTAATGCCAAATCCGATAAGccataaaatgaaattattgacCAACCCAGTTCCAAACAAAGTTCAACAAAAAATGATTACCCCACCGAAACCTATTTTAATCAAGTCTGCTAAAGGGCCTCAGAACAATTTGCCCTATCCATTACGTATTAAAGCCTTAAAGGATTTACAAATCAAAAAGAAAGAGCCACAGATTCTAAAAACTTTGCTAACATCCAAACCTGAAATACTGGTTTCAGAACCGGAAATCTTAAATTCAGCACCTGAGAGTCCTGAAACGCTTATTTCCGAGCCTGAGATCGCTTCATTTCAAGTTGAAGCCATCCTGTCTGAACCGGATGGGTTTGAACATCCTGTTGAAGGATTCGATCAGCATGATTCCTACAACCAACAGCAAGATGGGTATGACGACCACCAGGGAGACGAGTACAACGAGCAGGCTGACGAAGACTGTGATATTACTGTCCATGAAAATCAAAACTATGATACCGTTGATATGGAATCTGACAACGAAATAGAAATAGCTCGTGAAGGACAAGAAAATGAAATCGACGAAGAGGATCACAGTATGGAAGTTGATGGCAATATGCAAAATCATGATGAGAATATTAATGGTGAAGACGAAAATGCTGAAAAAGACCATAATGTTGATAGTTCTGAGAAAAAGGACAATCCAAATAACTTCAATGACGAATTTAAGGCTAATGATGACGTAGCAGAACAAGATGATGAACTTGACGGAGACAATGACCAAGACAACAATCTGGATGATAATGCGGATGAAGATGATGACGACCTTCCACCTATAGGAATAGCGCCAGTCGTTGAGATCAATGAAGATATCCAAACAAATTCTTTTGGTGAACACAATGAAGAAGGAGAGGAGGAACTTGCTGATACATCAGAGCTTAATGATAATGCAGATGGGGCCGAGGAAGTCAAAGAGATCGATCCTGACAAATTATACGTTACTAAAACGCAACGTGACTTTATATCTAAGTATCGTGATATTATTCAGCAGATTAATACAAAAAGATGTATTTGCTGCGACAGGGAGCATCCACGTAGAAAAGCCGTTATTCAGCACTTACAGAAAAATGGGCACAAGGTACCAAAACATACCTGCTACAATTGTGTTGTTACATTTGGACATATAGGTGCTCTGCTTAGCCACATGAGATCAAATTCATGTACTAATTTatggaaaattatttataatgaaaatggTATCACTGAAGACTTAGTGTTAGAAGACCCGAAATGTGATAAATCACAATATAAGGACATTTTCAGTGCCAGGTCGTATTCTTGTAAACTGTGCCCTGCTAAATTCCAATTGAAGCAATTTATAATGAAGCATGTATTAGACGTCCATGAAGATGGACAGTCTCGCGTTTCTCTGAATTGTGTTCATTGCGGAGCATGGTTTAAAGATaagagttttattaaaaaacatatacgTAACGGCGAATGTACAGTTTATATATCCTGCGATTTATGTGCAGAGAAATTCCCAAATGTACATGAATTCAATGCACACGCAATGGCTGTTCATGTCGGTAGTGGTGATCAATCTAATAATCAGAATAAATGCGTCGACGAACGTCCAACGGATTGCCCAATATGTGGCAAAAAGAACAACAACTATCCAAACTTggtgaaacatttaaaaatcataCATAATGAAGAAAAACCTCACTATTGCCAACATTGCGATGTTAAGTTTGAACAAGCTACGGATCTTAATAAGCATATTTACATGGAGCATTCTGATAGGAACTTAGGAATGCAAACAGAACCAGACATAAGCCTAGTCAAAGAAGAAGCTGAGGAATATCATTACTCTTGTACAGAATGTAATGCCATATTCGAAACTGTTGACGCATGGACTGATCATCAGGTTGCTGAACATAATCAAGTGGCGCATCATTGCGACCAATGTGAAAAGAAATTCCTACGACCATCTGAACTTGCTGAGCATAAGAACACCCATTTGCGTGTGAAATTTTACCCTTGTAGTGTTTGCAATAATTCGTATAGTACTCCGCAAAAATTATCTGAACACGTACAAAAAGTTCACCCTGGAGTGAGCGGAGCTTTTCCTGGTACTGAAAATGAGTTTTATTGCGACATTTGTATAAGATCTTTTAAAAGTCGCCAAGCATATTCTAACCATATGCGCATACATTCTAAAGTTCCAACCACTAATAGAAAACCTGTAGAGTATAAAGGTTTTGCGCCACAAATCATTGGTAAACCCATTAAGCAGATTATTTCCATTCAACAGCACCCAAGCTTTATATCTTTCAAGTCAAATTGTAATGTGCCCAATGCACCTTATTCTTGTGATATTTGTGGCAAAGGctttatgcacaaaaagaatATTTGGAAACATAAGAAAGTGTTACACGCAGATCTTGTTCACGATAGAAACGACAGTGAGGAAAACACCATGCATGCATCGACAGAGGAAGATGATTATAATCCCGATGAGAATGGTGCTATTCTTTCTACACCTCAGTTTAATAGTTTCAATTTTTCAAGCTTCAATAATGTGCAGCCGCAACCTGCGCAGCCACAACAACAACCACAGCAAGACCCTGTGCCGTTTTCTTGCGAAATATGCCACAAACGATTCCCTCTTAAAACTAGTTTGTGGAAGCACAAAAGAGCTAAGCATGGTATCATTAACTTTAATTCCAGTGGAACTGCTGATGGTCAAAATCAACCAAACGAAGCAGGTAACAGGTCTAGTTGTACAATTTGCAAAATTACTTTCTCAGACAAAAAGTCTTATTATCGCCATAGAAAGAATGTTCACAAGTCGTCCGTACAGATGTGTAAGATATGCGGTAAACCACTGAGCTCAACGTTGGAGTTGTATGAGCATCTAAAAGCTGCCCATTCACGCGAATTACTGGGATACAATGCTAATCAAGGCTCCAGCAAAATGCAAGATATAAATCCAGAATTGGAAGTTGAATACGAAAATGATCAAGAGTCTACGGATCCTAGTGTGGAGTATCAAGCTCGGTACCCATGTGATACTTGTGGCAAACAATTTGTAGGATTACTCGCATTGCAAAATCATCAATGCATAAACCAGACATCATCACAGCCGCAGTCTTTCGACTGTGAGATTTGCCATAAAAGTTACTCATCTATTGCAGCACTTAAGAGTCACCGAGGTTGGCATTTACGATCGCCAGATGGAAAAGCTGCTGCAAATAACTCTGGCCTTTGGATGCCCCAACATAAAGTAACCAACAAAATCAGCAAACATGAAATTTTGGACGCGTCTCAACTGGCTCGTGTGACGCATTCGACACCCGCCGCTGTAGTAGCCAAAAGAAGACTCCCACCAGAGGTGGAGGTCACTGTAGTAAATCCCAATAAAAAAATGCGTTCTGACGACTCTCTCGAAATGGACCAGCAAGGCAGTACGGAAGATAGGTATTGCACAATTTGCGACAAAGAATTCACGAAACGCGCTGCTTATCAGCGCCATATGGATGAGGTTCATCAGCCGAACTCGgtgttttgtcctgtgtgcgaaAAGAGTTTCACTAGAAAATCTACTTTATTGGTGCATATGAAGAAACATTATGAGGGTGGCGAAGGTGGATCGTCTGGGCAATTAGATGACGAAGAAGAGGAGGGTCATGCATGCGATTTGTGCGGGGCGCAGTATGATACGGAGAATGCTCTAATGGCTCATAGGGAACGCCATCACGGGGAGGAGTCGGGAGAATCCGAGGAGGAAAGTGTGCCTCCTCCAGGGGAATTCACTTGTGGTCAATGCGGCGATGGTGTAGCGTCCCCTCGCGACTTGATCGCTCACCGCGCTGTACATGCCACTCCCACTAAGTTCTTCTGCAACATATGCAAGGTTTACTTCGCTAGAGCCCTGGACTTGTCCTCTCACACGAGGGCGCGACACGCGGATAACGAAAAGGTCTTCTTCCCTTGTGCCATGTGTGACAGGTTTTATATGAACAAGAAGAGCTTGCAACGGCACATCGAGATGGCTCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDETEPPVLASKIKDCVSVQISENDDLPTNVCRKCVDNVNNWHTFKTVCERTQNKLELLVKKDESHLEEINIKSEPLSDEAYDDGVVIDTSYLDSENASSSNKVQTEGPPILASLGLTPRSDKKYVDPRMDWQRVHAILDMVQDDDAIDSLQSIEECDMLQQSAHNSESESELQEVDDMYLDCKIGYLCKNRKMLSRNPKLSPSMNNSKIKEASTLRKRKLEEPKSCFLPLTAWQLMFTDDLIELIVNSTNNNILKSGHSIASSTNVGEIKTLIGILYLQGVMRPTHQTQGELWNKDFGVPCVRGAMKQDRFRFLLTNLCFDTGDDDGIIQFDIMKRMRKVFEIFAMNCRGSYEISNTAVIDDILVPVFGPCPFRYEMKNKPLGCGLKMVLLVDSSNLYINNLDIITDPYFGPKEIVNKMVQHLSGTGRTLVMDSWYTSMELLNKLKDKHKLFAIAAVHPSDDIIPPAFSSKFRKLKTFMTGFLDDDFLLTSFVNSKRRSVNVLTNEAKFYKRGYSNHTTVVSAYRKNQSSVEVVDVLMHYYTTMQHTNDWTMSLFFTLLNIAAINAQVIWSTQNTSRIMKRRSFIIDLATSLMEKERPLSPTDELLGMESEKDDEDEDEEANEPVRTFAKVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCSRSYRYSHNARRHELTAHGFDRYTNKVMKKNQHNRMHPKLRPNPFNPKARLMPNPISHKMKLLTNPVPNKVQQKMITPPKPILIKSAKGPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEILVSEPEILNSAPESPETLISEPEIASFQVEAILSEPDGFEHPVEGFDQHDSYNQQQDGYDDHQGDEYNEQADEDCDITVHENQNYDTVDMESDNEIEIAREGQENEIDEEDHSMEVDGNMQNHDENINGEDENAEKDHNVDSSEKKDNPNNFNDEFKANDDVAEQDDELDGDNDQDNNLDDNADEDDDDLPPIGIAPVVEINEDIQTNSFGEHNEEGEEELADTSELNDNADGAEEVKEIDPDKLYVTKTQRDFISKYRDIIQQINTKRCICCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNENGITEDLVLEDPKCDKSQYKDIFSARSYSCKLCPAKFQLKQFIMKHVLDVHEDGQSRVSLNCVHCGAWFKDKSFIKKHIRNGECTVYISCDLCAEKFPNVHEFNAHAMAVHVGSGDQSNNQNKCVDERPTDCPICGKKNNNYPNLVKHLKIIHNEEKPHYCQHCDVKFEQATDLNKHIYMEHSDRNLGMQTEPDISLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCNNSYSTPQKLSEHVQKVHPGVSGAFPGTENEFYCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPVEYKGFAPQIIGKPIKQIISIQQHPSFISFKSNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVHDRNDSEENTMHASTEEDDYNPDENGAILSTPQFNSFNFSSFNNVQPQPAQPQQQPQQDPVPFSCEICHKRFPLKTSLWKHKRAKHGIINFNSSGTADGQNQPNEAGNRSSCTICKITFSDKKSYYRHRKNVHKSSVQMCKICGKPLSSTLELYEHLKAAHSRELLGYNANQGSSKMQDINPELEVEYENDQESTDPSVEYQARYPCDTCGKQFVGLLALQNHQCINQTSSQPQSFDCEICHKSYSSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKISKHEILDASQLARVTHSTPAAVVAKRRLPPEVEVTVVNPNKKMRSDDSLEMDQQGSTEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLLVHMKKHYEGGEGGSSGQLDDEEEEGHACDLCGAQYDTENALMAHRERHHGEESGESEEESVPPPGEFTCGQCGDGVASPRDLIAHRAVHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -