Mnit026017.3
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421440.1:2520710-2523064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.6e-06 0.00078 20.6 4.6 1 23 8 31 8 31 0.95 2 21 0.036 3.2 9.2 2.3 2 23 37 59 36 59 0.94 3 21 1.1e-05 0.00098 20.3 0.2 2 23 68 90 68 90 0.97 4 21 2.9e-05 0.0026 18.9 1.0 2 23 99 121 98 121 0.92 5 21 0.0027 0.24 12.7 0.8 2 23 129 150 129 151 0.94 6 21 3.3e-06 0.00029 21.9 2.0 2 23 160 182 159 182 0.95 7 21 2.2e-06 0.0002 22.4 1.9 1 23 188 211 188 211 0.98 8 21 0.0018 0.17 13.3 1.4 1 23 219 242 219 242 0.96 9 21 0.00016 0.015 16.6 0.2 1 23 263 286 263 286 0.98 10 21 0.00059 0.053 14.8 2.8 1 23 316 339 316 339 0.96 11 21 0.83 75 4.9 2.3 2 21 347 366 346 367 0.92 12 21 0.033 2.9 9.3 0.7 2 23 376 398 375 398 0.93 13 21 0.082 7.4 8.1 8.0 1 23 420 443 420 443 0.96 14 21 0.00013 0.011 16.9 0.8 2 23 450 472 449 472 0.96 15 21 7.4e-05 0.0067 17.7 4.0 2 23 479 501 478 501 0.94 16 21 0.00062 0.056 14.8 3.1 1 23 507 530 507 530 0.98 17 21 0.22 20 6.7 7.2 2 23 538 560 538 560 0.95 18 21 0.00072 0.065 14.6 0.3 1 23 567 590 567 590 0.94 19 21 0.047 4.2 8.9 0.5 1 19 597 615 597 617 0.96 20 21 0.04 3.6 9.1 2.8 5 23 637 656 634 656 0.90 21 21 0.21 19 6.8 0.2 1 16 706 721 706 723 0.90
Sequence Information
- Coding Sequence
- ATGTACCAGAACATGTTAGATTTCATGTGCGACTACTGCAGTCGTACATTTACAAGGAAATACAATCTCCAAACTCATATTGAGAACTGCCATCTGACGACAACATGTTTTTGCGGAATTTGCGATCATAAATTCGGCAGTCCTGCCGGTCTACATTTGCACCTTCTAAGGGGACACAACAGATTCGGCAAACCATACCCAGAATGCGATATTTGTGGCCGGATTTTCACCAGAAAACAAAACATCATGTCGCATATGATCACAGTACACCTCCAAGGAATAGGCCCAGCAATAAGATGCGATATTTGCAGCAGATCCTTTACTACCGAAAGAAATCTTAGACGACACAATAATCTCTTACATAATCCAGAAATGGACAACCCTACCTGTGATAGTTGTCTCAAAGTCTTCAAAGGCAAGCAGTCCTTGATTGCACACATCCAAGCACATcataatgttttattcaaaGGTTCCGTGAAATGTCATTTGTGCGGCAAAGCATATACGAATAACAGAAACTTAAAAAGACACGTGGAGATGTTTCACGGTGAAAGAGGAGAATTTCGATGCGATGTGTGTCCTAAAGTTTATACTTCAAATCAAAGTTTAAAGAGACATACGAAAACAAGACATATTTCTGAAGATTTTGAAGTTTATCCGTGTTGTTATTGCGACAAACACATAGCTGGTAAAGATAATCTGGAAAGTCACATATCCATTTATCACCAGTATGATAAATTTTCCGCTGAATACAACGACGATATTGTTCTtccaaacaataattatttcacaTGTGACGTCTGTGCAATGAACTTTGACGAGGAATCCAATTTAAGACAACACATCAAAACAGATCACTCATTTgagatattttatgaatattgcAGAAAATCTCTATTGAAACAAGTTGTTAAAACCAGCGCAAGAAAGTCTAAGAATAGACTTTACAACTGCGAATATTGTCGGCACGTCTACTCCAACGTTTACGAGTTCAAGAATCATATGAGAGCCAATCACGATAAAGAGTATTCACTGTCGACTTGTAATGTATGCTTTTGCAAATTTTACAGTAAAGAAAATATGGATGATCATAAAAAGATATGCCTACCGCCTGACAATGTCAGTAGTTGCAATTTATGTGATAAGCTGTTTACGGATGTGTCTAGTTTGGAATTCCACACAAAGATATTTCATCCCCAAGCGCAAATTGCAGATATATCTTCAACGATTTTGGAAGATGCAGTTGACGGCAATTCGCACAAGTGTTTACATTGCGACCGATCATATTACAGCGATAGGTCTTTAAAACACCATGTTAAACTCAAACATACCTCAGACCAAATGATGGAATGCCAGCAATGCGGCAAAGTGTGCAGCAACGAGTTTTATTTAGCGTCACACATCAAAATGGTTCACGAGAATGTCACTTGGTCCAAGTGTGATTATTGTGACAAACATTTCAAATCTAAGAGAAATATTCGACGTCATATAGAGTATACACATCTGGGCATGCAAAGGTACAAATGCGTGAAATGTGAgactttatttaaagaaaagagAAGTCTGCGCAAACACGTCAGAACCAAGCATCCAAACTCCGTTTCTTTTCCTCAATGCCACATATGCCATAAAAGATTTGAGTCAGCCAAATCAtgcaaaatacatttaaaactaATGCATTCTTTCAATATGAACACGTATCCGTGCGATTTGTGCTCAGTATCATTCAGTTCTAACGAAGCGCTGACAATACATTTTCAGAACAAACATTTAGCAGaagatgaaatatataaatgtgaGAGATGCAACTTAATATTCAAGGGGCAGGAGAAGTTCGAGCAACACTCAGAAGCATGTCCAGAGCGCTTGGTATCTAAAGTTGAGCAGAAACAACTGCCTCGATGTATTCTTTGTATGAAAGACTTCAGCACTCGAAAAACTTTGAAACGACACATTAAGAAATTCCATTACGGCTTCAACGTTGATGAATTAGCGAACTTTGGAACAAAACGTCGCGTATTAAATGTCGATTGCAAAGAATGTATTCGTTGTATTAACGgtgatttttattacaatctaTATCAGAATTTGAAACATCTCACAGATCCTGTTATATTTAAATGCGAAGCTTGCGACAAATCATATAACTCTTTAGAGTATTTAGTGTTAAGGtataaaatgaattatgaagAGGTTGGGAGAGGAAAAATGATCTTAAGTGAGTTGTGTACGGCAGAAATGAGTGAAGATGAACATGTGCAAAACGACAACAGTCAATATATGGAACCAGAAAGCACTACTAATGATATCAAAGTAGAAGTAGAGGATATAAAAATTGAGCCAGATTCTCCTTAA
- Protein Sequence
- MYQNMLDFMCDYCSRTFTRKYNLQTHIENCHLTTTCFCGICDHKFGSPAGLHLHLLRGHNRFGKPYPECDICGRIFTRKQNIMSHMITVHLQGIGPAIRCDICSRSFTTERNLRRHNNLLHNPEMDNPTCDSCLKVFKGKQSLIAHIQAHHNVLFKGSVKCHLCGKAYTNNRNLKRHVEMFHGERGEFRCDVCPKVYTSNQSLKRHTKTRHISEDFEVYPCCYCDKHIAGKDNLESHISIYHQYDKFSAEYNDDIVLPNNNYFTCDVCAMNFDEESNLRQHIKTDHSFEIFYEYCRKSLLKQVVKTSARKSKNRLYNCEYCRHVYSNVYEFKNHMRANHDKEYSLSTCNVCFCKFYSKENMDDHKKICLPPDNVSSCNLCDKLFTDVSSLEFHTKIFHPQAQIADISSTILEDAVDGNSHKCLHCDRSYYSDRSLKHHVKLKHTSDQMMECQQCGKVCSNEFYLASHIKMVHENVTWSKCDYCDKHFKSKRNIRRHIEYTHLGMQRYKCVKCETLFKEKRSLRKHVRTKHPNSVSFPQCHICHKRFESAKSCKIHLKLMHSFNMNTYPCDLCSVSFSSNEALTIHFQNKHLAEDEIYKCERCNLIFKGQEKFEQHSEACPERLVSKVEQKQLPRCILCMKDFSTRKTLKRHIKKFHYGFNVDELANFGTKRRVLNVDCKECIRCINGDFYYNLYQNLKHLTDPVIFKCEACDKSYNSLEYLVLRYKMNYEEVGRGKMILSELCTAEMSEDEHVQNDNSQYMEPESTTNDIKVEVEDIKIEPDSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01020524;
- 90% Identity
- iTF_01020524;
- 80% Identity
- -