Mnit027926.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421442.1:4805235-4813954[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.039 3.5 9.1 0.2 1 23 54 76 54 76 0.98 2 39 0.051 4.5 8.8 1.4 2 23 147 169 146 169 0.94 3 39 0.00048 0.043 15.1 5.9 1 23 174 196 174 197 0.96 4 39 0.037 3.3 9.2 3.8 1 23 201 224 201 224 0.95 5 39 0.45 40 5.8 0.6 2 23 227 249 226 249 0.92 6 39 0.82 73 4.9 0.2 2 19 256 273 255 276 0.93 7 39 0.0038 0.34 12.3 1.5 1 23 329 352 329 352 0.93 8 39 0.038 3.4 9.2 0.1 2 23 381 403 380 403 0.96 9 39 0.022 2 9.9 0.8 1 23 425 448 425 448 0.96 10 39 0.0027 0.25 12.7 0.3 3 23 455 476 454 476 0.93 11 39 0.00015 0.013 16.7 1.9 1 23 481 504 481 504 0.92 12 39 0.00077 0.069 14.5 0.5 2 23 510 532 510 532 0.95 13 39 0.00015 0.013 16.7 4.4 1 23 536 559 536 559 0.97 14 39 0.31 28 6.3 1.2 2 23 566 587 565 587 0.95 15 39 1.1 98 4.6 1.0 1 10 593 602 593 606 0.95 16 39 0.00026 0.023 16.0 1.4 1 23 647 669 647 669 0.95 17 39 0.12 11 7.6 0.0 2 23 697 719 696 719 0.94 18 39 0.0099 0.89 11.0 0.1 2 23 740 762 739 762 0.96 19 39 5.1e-05 0.0046 18.2 1.4 1 23 767 789 767 790 0.95 20 39 0.00017 0.015 16.6 1.3 1 23 795 818 795 818 0.96 21 39 0.0023 0.21 12.9 0.4 2 23 821 843 821 843 0.96 22 39 0.03 2.7 9.4 0.8 1 23 925 948 925 948 0.93 23 39 5.3 4.8e+02 2.4 1.0 2 23 976 998 975 998 0.94 24 39 2.6 2.4e+02 3.4 0.1 2 23 1021 1044 1020 1044 0.92 25 39 0.00011 0.01 17.1 0.3 3 23 1051 1072 1050 1072 0.94 26 39 0.0044 0.39 12.1 3.2 2 23 1077 1099 1076 1099 0.94 27 39 0.15 14 7.2 3.2 1 23 1104 1127 1104 1127 0.97 28 39 1.6e-05 0.0014 19.8 4.2 1 23 1131 1154 1131 1154 0.97 29 39 0.00065 0.058 14.7 0.3 2 23 1161 1182 1160 1182 0.96 30 39 0.2 18 6.9 0.2 1 10 1188 1197 1188 1202 0.87 31 39 0.059 5.3 8.5 0.1 2 23 1299 1321 1298 1321 0.95 32 39 0.0095 0.85 11.0 1.9 2 23 1343 1364 1343 1365 0.95 33 39 0.0056 0.51 11.8 1.2 1 23 1370 1393 1370 1393 0.95 34 39 0.086 7.7 8.0 0.2 1 23 1398 1421 1398 1421 0.93 35 39 0.017 1.5 10.2 1.8 2 23 1427 1449 1426 1449 0.93 36 39 9.1e-05 0.0082 17.4 0.3 2 23 1457 1479 1456 1479 0.97 37 39 0.3 27 6.3 0.0 2 23 1486 1507 1485 1507 0.95 38 39 2.3e-06 0.0002 22.4 0.9 1 23 1513 1535 1513 1535 0.97 39 39 0.00052 0.047 15.0 7.7 1 23 1541 1564 1541 1564 0.96
Sequence Information
- Coding Sequence
- ATGCCCTCGAGCCCTCAAAACGACGCAAGTAATGGAAATTTCATCTTTTCAGATGAAAATGGGCCGGAAAAAGCGCACCATACTAGTAGAAAACGTCGAAGGAATCTGCAAATATTGTTCAACAACACCTCGATGATACCGTTCAAATGGCGCGGCAAGTTCATGTGCTTTTACTGCGGCGAAGACATTGACGATTACATCGAACTCAGAGAACATACTAGATCGCACGGACTCTGCTCCGATAGAGACAGAGCTATAAAACTAGTCAAATCTCGCGATTCCGAAGTTAAAATAGACGTTTCCGACATAATTTGTAACTTATGTAATGATTCCTTTGATTGCTTAGAAGACGTGACTTCACATTTAACTATGAAACATCAATTGCCTTACGAGAAAGACTCTGATGTAGCGATGATAGCATACAGACTTGTCGACctaaaatgtgtaatatgcGGAGAACAATGCGatagttttagtaaattagTTAAACACACGAATCTTAACCATCCGATTAATTGTTTCGTATGCCACAACTGCAATAGGAAATTCAACAAAAAACGAGATCTCGAATCCCATGTCCGTCTACATCATAGAAAGGTTTATAACTGCAAGAAGTGTTGTCTGACTTTCACCAGCAATGCATCGCTTCAAAAGCACAAAGCTAAAGCTCATATATCCATGTGTAACATTTGCTTTGAGCCATTCACATCTAAAATAAGCAAATTAGATCACGTTAAACAGACTCATTTCGGCGCTGACGATCTAGAATGCGGTTTCTGTCAGAAAAAACTTAGCACCAAATTAGCTTTATTTAATCACGCTGGCAAATGTAATGTTCAGCAAATCAAAGAGGACACATTAATGTATATGCAACCTTCCACTGATGAACCCGATAAAAAAGCCACAGTAgcagaaataaggaaaaacaTTGCTTGCATTGTAAATATGTCGACGGCCCTTCCTTTCAAGTATTTCATGAACAAGTTCAGATGTTTCTATTGCCCTAAAGACTTTATAGAATGCGACGATCTTAAACAACACACAGTAATAGAACATCCATCATGTAACAGTAAACTTAAATGCTTAAGGCTTAGAAATAGAGaacatggtattaaaataaaaacggaTATTTCTTCGCTTTCCTGTAAAATGTGTTACGAACCTTATCAGGACTTAGATACGTTGATCAATCATTTAATAACTGAGCACAAAGCCCAGTATGACAAATCGGTGGACAACAACATGCAACCTTTTAAACTAGTTAGGGATAATTTTGCGTGTCCTTTTTGCGAGGATTCTTATAGATATTTCAGTacacttttaaaacatataagcACAAGTCACACAGAAAACAGGAATATTTGCTCGTTTTGTGGTATGTCCTTTAGAACGGATCCTAGTTTGAGAGCGCATATAACTCTACGGCATAAGCCTCACGGACACAAATGTGATGTTTGCGATAAAGACTTTACGACAAGACACGCGCTGAGAGATCATTTGGGTAATGCACACGGTAGCAAAGTGGCCAAATGTCAAGTATGTTCCGAGAGATTCACTTCTCAATATGCAATGCAAAGGCATTTAATTAACGCCCATGCTACGGGGCACAAATGCTCATACTGCGGCAAAATGTTCACAAAGAACTCATTCATGGTCAATCATGTTCGACGCACACATCTCAAAGAAAAGAACGTGGAATGTTCTGTGTGTTTCGAACGATTCTTCGATGTACATCTATTGAGAATGCACACAGTAAAACATGTAGGCGAGAGAAATTTCCACTGTGACATATGTGGAAAGAAATTCTTATGGAAAAAGAATCTCAGAGATGAGTTCACTCCGGCCCCTTACGGAGGTTGTGCTTCTGAGCGCAGAAGAAAAAACTTGAGAATATTATTCAACAATACCTCCGTGCTGCCATTCAAATGGCGCGGGCGTTATCTCTGTTTCTACTGTCCAAAAAGCTATACTGAATATTCAGAGTTAAAAAAACATACCATATCACACGGCTCCTGTTCGACTAAAGattattctttaaaaatcataaaaggGAGTAATATAGAAATCAAAGTCGATGTTTCCGATGTGACTTGTAAAATGTGCAATGAACCTTTCGGTAATCTTAATGAAGTAATAGATCATTTGATTGTTAAACATGACATGGAGTATGACAAGAAAGTAGAAATACCTTTTCAAGCTTACAGATTGGCAGACATGAAATGTTTAATCTGTCAAGAAAGCTTTGCTTATTTCGGCTATTTAATAAGTCACGTGAACGTCGCACATCCACAGAACTGTTTCATTTGCGATGATTGTGGAGTTACCTTTAATAAGAAAAGAGATTTAGCTGTGCATTATAGATACCACCATAGACAGGGCGGCTATCCTTGCGATCAATGTGCAAAATCTTTTGCAAATCACTATTTACTGCGTACGCATCAAAACAATGTTCATTTTAGGAAGTGTAGGAATTGCAATTTGAGGTTCGTGTCCCTTGCATTATTGCAGAAGCATATTTCTATTGAACACCCCGATGACGGTAGTTTGAAATGTGAGTTTTGTGCCAAACAATGTCATTCTACTCAAGGATTGAAGCAGCATAAGAGCAAATGTCGCGTTAAGTTCGTCGTGAGCGTAGATGAAGCTAATGACAAGTTTTTAACAGACAACGACACTGAGCCTaggaaaaaacaaaatgtaaagcAAATCCGACAGAATATTCAGCTAGTATTGAACATGTCGACCGCAGTGCCTTTTAAATTCTTTTCCAAATTTTCATGCTTCTATTGCGCTAAAAAATTTGTTGAGTTCGAAGATCTTAAACAGCACACTGCTTTAGAACACCCTGTTTGTGATTTGAAATCTAAATCTATGAAGAAATGTCGAGGAGAGAGAGTTACAGTGAAAATAGACGTTTCCGCATTGTCTTGCAAAGTCTGTTCTGATAAGTTTGATCACTTAGACAGGTTTTTAGATCATATAATCGTGAAGCACAGAGCTGATTATGACAAGAATCTAGTAGGTTGCTTGGAACCTTACAAGGTTATAAAAGACAAAATTCCTTGCCCCTTGTGTCCGGATAAAGACTTCAGGTATTTCGGTATCCTGCTCCGCCACATGAATTCCGATCACAGCAATAACAACCGTATATGCGATTTTTGCGGTCGTAGCTTTAAAAGCGTTGCAAATTTGAAAGTGCATATCTCGTACACGCACACAGGTTCTTGCGAATGCAATATATGCGGAGTTAAGTATAAAAACCAATGGTGTCTAGCGCGACATAGAGCGAAATCTCACAATGCCAAGGATTACAAGTGCTCCAAATGTGCTGAGCTGTTTCAATCTCAGTACCACAGGCAAAAGCATTTGATCAAAGCTCACGACATTGGGCATAAGTGTGAGCAGTGCGGCAAAATGTTCACAAGGAACTCTTTTATGAAAGATCATATAAGACGGACGcatttgaaagagaagacagtGCCTTGCTCAGTTTGCAATGAAAAGTTTTTTGATAATTACCTTTTGAAGATGCATATGGTGAGGCATGAGGGAGATAGAAGATTCAGTTGCACAGTGTGTGGTAAAAGCTTTCTAAGACGCAGTGCAAAGTTCAACACTGAGGGagacaaagataaaaaaatggaaaatgCCAATAAGCTTCTGTTAAAACGACGCAATATTGAATACCTGCTACAATACAGCAACGTCACTCCATTCCTATGGTACAAGGGGAAATTCAGATGCTTTTACTGCACAAATCCAATGAAGGATCTCCTAGCTCTGCGGGAACACACAGTTCTGCACGAACATGACAATTTGGAGCTGATCGTTTTTGATCGCACCAAGAAAAACAGGAATAAAGACGGTGCTGTCAAAATTGATGTGTCAGATCTAACGTGTAAGCTCTGTCCCCAAGGAATATCGACGCTTGAGGAGCTGATACACCATCTGATAATAGCGCATGACGCTGAGTATGACGTAAGCGTACCAAATTGCGTTCTTCCTTTCAAACTAAAAGATCAGCCTACGTGCCCTACTTGTGATATGAAATTCGTATTTTTCGAGTATCTACTCCGGCACGCCAATAAACATCATCTTGCCCATGATTACATATGCGATGTTTGCGGAACAAGTTTTCAAGGTGAAAACCATTTGCAAATGCACAATAGGTATTATCACAGACATGGTGGTTACACTTGCGAATATTGCGGGATTAGCTTAGCGACGTTATCCAAGAAAATATTGCACGAAAAGAACGTGCACTTGGTGAACCTATCCACGTGTCCTCATTGTCCCGAGACCTTCAAAAGCACATACTTTAAGAAGATGCATATGGCAAACGTTCACGGGATAGAGGAATTGAAAATCAAATGCCCTTATTGTCCAAAAATTTTCACTCAAGAGAGTATAATGTCCAGACATATGAGACGAGTGCACTTGAGAGAGAAAAACGTAGAATGCGAAGTTTGCGGGGACAAATTCTTCGGACCATACGATGTGAAACTTCACATGGTGAAGCACAACGGTGAGAAGAATTTCGTTTGCACTGTTTGCGGAAAGAAGTTCGCCAAAAAGAGTAATTTAAACTCTCATTCAAATATCCATACGGGAGGGAAACGTTTCATGTGCATGCTGTGTGATAAGACGTTTTCTCACCAAACTTACTACAAGCATCACATGAGAAATAGGCACGAGAATGAAAATCAATCTAGTATTGTCAATGCCACTGAAATGGTGAAAATTGACTTCATAACAGATGTTTTAGTTAGCGATGACATATCCGGACAGTAA
- Protein Sequence
- MPSSPQNDASNGNFIFSDENGPEKAHHTSRKRRRNLQILFNNTSMIPFKWRGKFMCFYCGEDIDDYIELREHTRSHGLCSDRDRAIKLVKSRDSEVKIDVSDIICNLCNDSFDCLEDVTSHLTMKHQLPYEKDSDVAMIAYRLVDLKCVICGEQCDSFSKLVKHTNLNHPINCFVCHNCNRKFNKKRDLESHVRLHHRKVYNCKKCCLTFTSNASLQKHKAKAHISMCNICFEPFTSKISKLDHVKQTHFGADDLECGFCQKKLSTKLALFNHAGKCNVQQIKEDTLMYMQPSTDEPDKKATVAEIRKNIACIVNMSTALPFKYFMNKFRCFYCPKDFIECDDLKQHTVIEHPSCNSKLKCLRLRNREHGIKIKTDISSLSCKMCYEPYQDLDTLINHLITEHKAQYDKSVDNNMQPFKLVRDNFACPFCEDSYRYFSTLLKHISTSHTENRNICSFCGMSFRTDPSLRAHITLRHKPHGHKCDVCDKDFTTRHALRDHLGNAHGSKVAKCQVCSERFTSQYAMQRHLINAHATGHKCSYCGKMFTKNSFMVNHVRRTHLKEKNVECSVCFERFFDVHLLRMHTVKHVGERNFHCDICGKKFLWKKNLRDEFTPAPYGGCASERRRKNLRILFNNTSVLPFKWRGRYLCFYCPKSYTEYSELKKHTISHGSCSTKDYSLKIIKGSNIEIKVDVSDVTCKMCNEPFGNLNEVIDHLIVKHDMEYDKKVEIPFQAYRLADMKCLICQESFAYFGYLISHVNVAHPQNCFICDDCGVTFNKKRDLAVHYRYHHRQGGYPCDQCAKSFANHYLLRTHQNNVHFRKCRNCNLRFVSLALLQKHISIEHPDDGSLKCEFCAKQCHSTQGLKQHKSKCRVKFVVSVDEANDKFLTDNDTEPRKKQNVKQIRQNIQLVLNMSTAVPFKFFSKFSCFYCAKKFVEFEDLKQHTALEHPVCDLKSKSMKKCRGERVTVKIDVSALSCKVCSDKFDHLDRFLDHIIVKHRADYDKNLVGCLEPYKVIKDKIPCPLCPDKDFRYFGILLRHMNSDHSNNNRICDFCGRSFKSVANLKVHISYTHTGSCECNICGVKYKNQWCLARHRAKSHNAKDYKCSKCAELFQSQYHRQKHLIKAHDIGHKCEQCGKMFTRNSFMKDHIRRTHLKEKTVPCSVCNEKFFDNYLLKMHMVRHEGDRRFSCTVCGKSFLRRSAKFNTEGDKDKKMENANKLLLKRRNIEYLLQYSNVTPFLWYKGKFRCFYCTNPMKDLLALREHTVLHEHDNLELIVFDRTKKNRNKDGAVKIDVSDLTCKLCPQGISTLEELIHHLIIAHDAEYDVSVPNCVLPFKLKDQPTCPTCDMKFVFFEYLLRHANKHHLAHDYICDVCGTSFQGENHLQMHNRYYHRHGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSTYFKKMHMANVHGIEELKIKCPYCPKIFTQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGEKNFVCTVCGKKFAKKSNLNSHSNIHTGGKRFMCMLCDKTFSHQTYYKHHMRNRHENENQSSIVNATEMVKIDFITDVLVSDDISGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -