Mnit008273.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421420.1:3387000-3387659[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-10 1.9e-07 31.5 0.0 1 41 13 53 13 56 0.92
Sequence Information
- Coding Sequence
- ATGAGTCCCCCTGCTCCTAAAAAAAGGAAGACATGGGATCCTGAAAAGATGAAAAAGGCGATTGAAGctgttaaaagtaaaattatgggATATAAACAGGCAGTCAAGGAGTTTCAAATACCCAGAAGCACGTTGAAACGACTCGTGAAAGACTCTGAAGAATCTTTAGATTCTCTTGTTCACAAGCGACTTGGCAGAAAACCTACACTACCACCTAAATTGGAGGAAAAGCTGGTTGAGTACATTTTGATAATGGAAGCGAAATACTACGGACTTACGAGAATGGATGTCCGCCGAATGGCTTATCAATTGGCTTCAAAAAATAACTTACCCAATCATTTTAAAAACGAAGTGGCAGGTAGGGCTTGGCTTGATCTTTTCCTGAGACGACATAAAGACGTATCTGTCCGAAAGCCGATGGGAACATCATACGCTCGGGTGCAAGGGTTCAACCGCGAAGcggttaaaacattttttgacatattagGCGCTGAACTCCAGAAAAGACACTATCCTCCAGATAGAATTTTTAACGTAGACGAAACTGGGCTAACTATTGTCCAATCGAAAATTCCTGAGGTAATCGGCAAAAAAGGTAAGAGGCAGATAGGGGCTTTGACAGCAACAGAACAGGGATCGCGTCCGTCGTGTCCTGCATGA
- Protein Sequence
- MSPPAPKKRKTWDPEKMKKAIEAVKSKIMGYKQAVKEFQIPRSTLKRLVKDSEESLDSLVHKRLGRKPTLPPKLEEKLVEYILIMEAKYYGLTRMDVRRMAYQLASKNNLPNHFKNEVAGRAWLDLFLRRHKDVSVRKPMGTSYARVQGFNREAVKTFFDILGAELQKRHYPPDRIFNVDETGLTIVQSKIPEVIGKKGKRQIGALTATEQGSRPSCPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01020180; iTF_01020179;
- 90% Identity
- iTF_01020180; iTF_01020179;
- 80% Identity
- -