Mnit014494.2
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421426.1:13286897-13287508[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.4e-11 3.5e-08 33.9 0.2 4 41 18 54 15 57 0.89
Sequence Information
- Coding Sequence
- ATGGCgcgaaaaaaagtattaatcagAAAAAGAGGTGGACATTCGGCTGCCAATATGCTTAAAGCCCTTCAATTGCAGAGATCAGGTACAAGTATTAGAAAAGCAGCAAAAACTTATGACATTGCGTACCCAACCTTACGACGCTACGTAGCACAAAACTTGCACGTCAACATAGAGGACCTTGCTGAGAAGAGATTGCTACCGAATTATGAAAATCATCTCGTTTTTACCAGTGAACAAGAAGAACTTTATAAAGAGTACATAAAAGAGTGCGCTCTAAAATTTTACGGACTGACCCCAAGAGACTGCCGTAAAGTAGCGTACCAAATGGCGATTGTAAATAATGTAACTGTCCCAGAGAGTTGGCACCGAGATAAAATGGCAGGAAAAGAGTGGTTTCGGTCATTTAAGAAACGTCACGTTGATCTCTCAATAAAGAAACCTGAAGCTTGCAGCTTAGCCCGCGCGACGGCATTTAACAGGGAGACGGTCAAAtcattttttgataatttgaagACAGCAATGGGTCGTCATTCGTCCTTCAGCACTGGTTGCCGTTTGTATAATTTGGACAACGACTGTCCAGCGTCCACAAAAAGTTGTAGGGCCTAA
- Protein Sequence
- MARKKVLIRKRGGHSAANMLKALQLQRSGTSIRKAAKTYDIAYPTLRRYVAQNLHVNIEDLAEKRLLPNYENHLVFTSEQEELYKEYIKECALKFYGLTPRDCRKVAYQMAIVNNVTVPESWHRDKMAGKEWFRSFKKRHVDLSIKKPEACSLARATAFNRETVKSFFDNLKTAMGRHSSFSTGCRLYNLDNDCPASTKSCRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744564;
- 90% Identity
- -
- 80% Identity
- -