Mnit020840.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421433.1:7567158-7571081[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-11 1.3e-08 35.2 0.1 1 39 93 131 93 135 0.95
Sequence Information
- Coding Sequence
- ATGAAATGTCCGGATCAACATCAAACTGAGGTAAAAGGATATGATAAAACCACATCAAATTTTGTCGGTCATTTAAAACGCAAACACGGTTCTTCCGTTGTAGACGAGTACAAGAAATATATGAAGGAAAATAAATTCAAGAAAAATAAAGGATCTAACCAAGCTTTAAGCCAATCCACAAAAAACAACAGGGAAACTACAAGAACACCTATAACACAGGAAGTGTTCAAGAGTAATTTGATTTTGATTAAGATGCCTCCGAAGAGAGCCCAGTGGACAGAGGACAATTTAAGGGCCGCTTTAGCGGCAATAGAACGAGGGCAACTGACGCAACGAGCTGCAGCTGAACGTCACAACATTCCAAGACGCACTCTCCGAAatcatataaaatcaaaaagtaaTATTAGGCGCTTAGGTCGTCGTTCAATATTGACAAATCACCAAGAAAAAGATCTTGTACAGCGGATCATACGATTTGCTAACATTGGTGTACCTGTTACTCCAAAAGTCATACGGcgccaagcatttttattttgcgAGAATCATGGTATTAAGCATAATTTCAATAAAGACTTTGGTATTGCGGGCAAAGACTggcttaaaatgtttttgaaaaggAACCCAGAAATTTCCAAAAGAAAAGCCCAGTTTATGAATccaggcagagcacaaaaattAAACCGTCCTATTGTTGCTCAGCATTTTCAAGAAGTGAAAGACCTATACGAGGAATTAGACATTCTACAGAACCCGCAACGCCTCTATAATATGGATGAAAAGGGATGTCGACTTACTATCCATCACCAACAAACTGTTTTGGCACAAAAAGGAGCTCGTCGAGTCCATTTGATTGCACCTGAGCACGCCGAAAATGTTACCATCGCAATGTGTGTTAATGCTGTTGGTACCGCTATCCCGCCAATGATCATCTTTAAAGGCCAAAGACAAAAACCAGAATATACAGATAACTTACCAGCTGGATCTATCGTAAAGATGGCTCCAAAAGGAAGTATGACCACGGAGTTATTTATAGAATTCATCAAGCATCTAGGGAAGTATAAAACGCAGGGAAAAGTCTTGTTAATCTTTGATGGAGCGTCCTCGCACCTGGATTATACAATTGTTGAAGAAGCAGATAAGCATGATATTGTGCTTTATTGTTTGCCTAGTAACACAACACATGAACTTCAACCCCTCGACAAATCCGTGAATAAGTCTTTCGAGCATCACTGGGATCAAGAAGCTATGACATACATGTATCAAAATCCTGACAGACGCTTGACGAAATCGAACTTCAACAAAATATTCTCAAAAGCTTGGTCGAGGGCACTGActcatgaaaatataataaatggatTCAGGGCGACTGGATTGTTTCCATTTGACCCTGATGTGTTACCAGATGAAGCATTTGCACCAGCGATCTTGACCGAACATCCACCTCCACAAACTTCAACtattattgagccaaacttagaGTACCCAGAAGTAATGTCACGTTTTGACACTGTTTCACCATCAATACTTAACATCGAAGAATGTACTATAGCTGACATTGTTACCCCAGAAAAGCAAATTGGTGTAAGGAGTTTAACTGATATTGCTACGTCAACCTTTCCTGTGAAAGAACCACTaagaaaaaatactgattgCAATGCTTCAACTCCATCGCCCAAACCATCAACATCTGGTATTGTAACAAAACGTCCTCTTATTCTAAGTTCAGACTCAGAGACTGATATTGAGCCTGACGCTGCTGTACAGATGTTGAATAGAAATATTCACACCAGAATCAATATATATACGTCCGAAGAAGACTCAGATGACGATACTCCGCTAGCTAGTCTTAAAACAAAGGAAACTAAATCCCCGTTCCACGAACTTATGCCTACTCCAAACTATGCTGTAATCAAGGACAAGCCAAGAAGAAAGGCCATCAATTTTAGAGACATGCGACAATGTGTCCAATGTTTAAAATGGTACCACGAAGAGTGTGTCGGACTCTCAACCGACGATAAAGATACGTTTTATTGCTGTGATTGTGATTAA
- Protein Sequence
- MKCPDQHQTEVKGYDKTTSNFVGHLKRKHGSSVVDEYKKYMKENKFKKNKGSNQALSQSTKNNRETTRTPITQEVFKSNLILIKMPPKRAQWTEDNLRAALAAIERGQLTQRAAAERHNIPRRTLRNHIKSKSNIRRLGRRSILTNHQEKDLVQRIIRFANIGVPVTPKVIRRQAFLFCENHGIKHNFNKDFGIAGKDWLKMFLKRNPEISKRKAQFMNPGRAQKLNRPIVAQHFQEVKDLYEELDILQNPQRLYNMDEKGCRLTIHHQQTVLAQKGARRVHLIAPEHAENVTIAMCVNAVGTAIPPMIIFKGQRQKPEYTDNLPAGSIVKMAPKGSMTTELFIEFIKHLGKYKTQGKVLLIFDGASSHLDYTIVEEADKHDIVLYCLPSNTTHELQPLDKSVNKSFEHHWDQEAMTYMYQNPDRRLTKSNFNKIFSKAWSRALTHENIINGFRATGLFPFDPDVLPDEAFAPAILTEHPPPQTSTIIEPNLEYPEVMSRFDTVSPSILNIEECTIADIVTPEKQIGVRSLTDIATSTFPVKEPLRKNTDCNASTPSPKPSTSGIVTKRPLILSSDSETDIEPDAAVQMLNRNIHTRINIYTSEEDSDDDTPLASLKTKETKSPFHELMPTPNYAVIKDKPRRKAINFRDMRQCVQCLKWYHEECVGLSTDDKDTFYCCDCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709118;
- 90% Identity
- iTF_01507105; iTF_01020171; iTF_01020172; iTF_01020173; iTF_01507118; iTF_01020176;
- 80% Identity
- -