Mdom005748.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- ush
- Assembly
- GCA_000371365.1
- Location
- Scaffold18905:171914-263808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.018 0.87 9.9 0.4 1 21 268 288 268 293 0.90 2 9 0.00037 0.018 15.1 0.8 1 23 347 369 347 369 0.98 3 9 0.062 3.1 8.1 1.0 2 21 404 423 404 424 0.92 4 9 0.064 3.1 8.1 2.9 2 21 849 868 848 869 0.93 5 9 0.012 0.58 10.4 0.0 3 21 910 928 908 929 0.91 6 9 0.15 7.6 6.9 0.1 1 23 1025 1047 1025 1047 0.97 7 9 0.017 0.83 9.9 1.4 1 23 1053 1075 1053 1075 0.99 8 9 0.00042 0.021 15.0 0.6 1 23 1158 1181 1158 1181 0.96 9 9 0.56 27 5.1 0.7 2 20 1323 1341 1322 1343 0.91
Sequence Information
- Coding Sequence
- ATGTTTGGTGATTGTTCAGATTCCACCGAAGACATGACAATAGATAGTAGAGATTCCAAAGAATACAatacaaacaatataatggacaTAGACGATCATCATAATCGACAACCGGAGCAACAGCAACGCACCAATATGTCGGATGAATGTCGCACCACGCCACCCAATCGCTTAACAAAAGAGACTGATGATAATGACTTGAATGATGAAGAAACTTCAAGACGGAGAATAGATCACGACAGTGATAACGGAGATATGGACAGTGAACCACCAATGCAtaaaagacagaaaatggactcaGAGGAAGTTGAGCAGCGATCCAGCCCAGCTTCCTCGCCAAACCATATGcagaaaatttcgaatatcgaaTCGAAATCCACACACGATGTCAATGATCATGATGATGATACCAATTCTAAGGATCGCAAATCATGCACTCCTGACAGCAGCTCCCATAACACATCAACTTCCAGTCCGGCAAAGTCCGAAGATAATTGTACTGAATCCCATGTAACGGCATCATCACCTCAATCGCAGGCTATGCCCAAACTAAGGTTGAATGCATTGCTGGCATCTGATCCAGCTTTGATGCCAGATGCCAAAGATTTGAAAGTGGTTCATGAGTCGCAGGCTCAGCAAAGGAAACAACAACgtatgcagcagcaacaacagcacgAAAGGGAAATTGACTCTCCAGCATCGCACTTGGTGGCCCCCGGTACCATACCCACCGTTGTGGAGCCCTTGATAAAAGCCCAACCCACACCACCTGTCGAGGTGGCACCACCACGCATGAAAGTGTTTATGTGTGTACCCTGTGGCATTGGATTCAGCTCACCCTCTACTCTGGAGGCCCATCAGTCCTACTACTGTTCACATCGGCATAAGGATAATGATGAAGACTCTGTGCCATCAGCATCTGCGCTGGCCGACAAGACATCCACCTCACCAGCCACTCAGGCCAATGTTGCAAATGCTACCCCGGCTGTGGCGGGTGGCCCTGAACCGGCCGCCAAGGCTCCAAAGACTGGCAAACAATATGCTTGCACTCAATGTTCCTACAGTGCCGACAAGAAGGTCTCACTCAACCGTCATATGCGTATGCATCAGACATCACCGGCACCCAGCTCGAATTCAAATAATGGTGGTGCGGTGGGGGGATCAGCTGCTGCCCTTCTGGAAGACAATACTAGTCAACAAATCGATCGCTATTGTAGTGACTGTGATATACGTTTCAATAATGTCAAGACCTATAGGGCCCACAAACAGCATTATTGCAGCTCAAGGCGCACGGAAGGCCAGCTGACACCAAAACTGGAGGTTTCCACCACAACATCTACCACACCCAAGGCCAATTCAGTGCATTCGGGTGCCATAAGTCCACAGACTAGAACTAAAACACCCACTCCGGCTATGGTGGCGGCAGCGGCCGCTGCAGCTGCTGCGGCAGCATTACAACAGCCTCCAAGCACCCCATTTCTGGCCTTGCCCACAAATCCCATTTTAATTATACCATATTCGTTGATACGGTCTGCCAGTCTCATTGCGGGACCACTACAATCACCCTCACCGTCAGTTGTAAATCCAGACACCACTTGTTTCACCTTGGATGGTGGACAATTGAAACCCTTGGCCACCGCCTTGAATATCAATGCTTTGAGTGCAGCCAATAATTTAGTAGGGGCCGCAGCCGCCGCCTCCTCtgtacaacagcaacaacagtatATGGTTGATTCCACACGCCAAACATCTTCGTCATCAAATGAAAGCCTATTAACGGAGAAGAATGTACGCCGAAATATCGAAGAACCAGCCGAGAATACACCCAAACGTAAAGGCGAGGGTTTGAGAGATTCTGCTCCCTTGGATCTATCCCTAAGACGTTCACCCATTGCCGCTTTGCTGCAAAGACAACAACGCCTAACAGCCGCCGCAGCAGCTTCATTTCTTGAATCAGCCAACAGCGAACATCATCCAAATCGTTTGGACATGGAAACCCTGCTGGAAGCGGGCAAAGAAAACTTGGTCCTCGACGATACGGGTAGTATTACGCCAGAACAAATTGTGTGTGCACCCTCATTGCCTAACAGCCCATCGATGAGTCCCTCACCCCGGCGTAGAGCCATAAGTCCAAGAAGTTCAGGGGCCGGCAGTACTTCCTCCATGTCACCACCAGCCACAATTCCACCCACAGCCGCATCAGCATCAAATCCcacaaatattttcgataacctTCATTTGAGATCAATGTTACCGGCTGAATTATTGAATCCCTTGttggcaaataaaaatttggaactTGCCCTCAAACTTTCAGCGGCGGCAGCAGCTGCTGCGGTCAGCTCATCAAATAGTGCAGCTGCTCAACCGGGTACCACACCTGCCGAATTGGCCGCCGCTGCTGTTGCAGCCGCTGCCTCGGGTCGTGGTGCTTTATTGGGCCTGCCCGTTCTGCCACCCACTGCAGCAGCCTCCGGTCCGGCACAGCCAGCCACACCAGCCGCAGCAAATCAGCCTCAAATCTATGTCAAACAAGGCGTTTCCAAATGCAAAGAATGCAATATTGTCTTTTGTAAATATGAAAACTATTTGGCCCACAAGCAACACTACTGTTCGGCCCGCAATCAAGAGGCCAGTGAGGGCGAAACAAAAATCTCTTCTACACCACCCATGGCTACGGCTGCATCGCCAGCAGAAACCACTCCGGTAGCATATCAACAATTAATCTGTGCAGCCTGTGGCATTAAATATACCTCCCTGGACAATTTGAGGGCTCACCAAAATTACTACTGTCCCAAAGGTGGTGGAGCTGTCGCAGCTGCTGCTGCAGCCGCCGCTGCGGCAGTTGCTGTGGCGAATCCAGATGCAGCGCCATTAGTTTTGCCCGCCAaagaaaaatgtacaaaatgtaaAACTGTGCATGAATTTGGTTTACCATGTCCCCCACCACCGGCATTGGTTCAACAGCCAGCAGCCCAAACTCCGGTAGCACCACCAAGCGCAAATGTTGCCACTGCAGCTGGTAGCAATAATTCTTCCTCATCAGTTGTCACTGGTCACAATCAAAATGTCTACAAATGTCCATTGTGTGATGCGGTCAGTCTAACGGCCAGTGAAAGTCGCAAGCACATGGAGACACATGGCACTGTCAAGGCCTTCCGATGTACCATTTGTCGTTACAAGGGCAACACTTTGAGAGGCATGCGCACCCATATACGCATGCATTTCGACAAGAAATCCACCGATTTGAATGAGGAACACTTTATGGCCTGCATTCTGGAAGATGAATCCATTGAAATACCCAGTGCAGCATCTTTAAATCAAGAGCATTTAGTgcagcagcatcaacaacagcagaaacatTTACAACAACAAGTTGCCGCTGCAGCAGCTGTGGCGGCTGGCcttcaacaacagcagcagcaacaacaacatcaacaacagcaatcGCAGTCACCGGCCCAGCAGGTGTTCAACTGtgatatttgtaattattcatcCACATATAAAGGCAATGTGttgcGCCATATGAAATTGGTACATCCTCACATTATTACCAATTCACCATCCATATCTCCAGAAGCTGGTGATTTAGAAGCTTCGGAAACCAATTCATTGAGTGGCAGTCACAATGGTGATAATGGGCTTAATAGttttacCATCAAATCTGAACCCTTGGATCATCCTCCTCCCCCCACGGTGGGTAATACAACACCCGTCATCTTATTGAATCCCCACGACAATAACCACTCTCCATTACCCAATATTGGGCAACATCCGGTACATGGAAATGATTTTGCATCACATCACATAAAAACCGAACCCATGGAAATTGCTGTTGGTGGTGAgggaccaccaccaccgcccTCAATTAGCATGAGTATTACACCTGCATTGCGCTCACCGGCCATTGGTCCACCGCCACCATTAAATTCCACACCCGAAGAGAATATCAATAATCAAAAGTATTGTCAAACATGTGATATCTCTTTTAATTATATGAAAACCTATTTGGCCCATAAACAATTCTATTGTAAGAATAAAATGCGTCGGCCAGACAGCAATGATAGTCCAAGTCCGAATCCAACAGCTGGTATTGGTTCGCCCAATGCCCTAATgatgcaaaaaaataaagaaaatctacAACAAGAAGCTGCCATTTGA
- Protein Sequence
- MFGDCSDSTEDMTIDSRDSKEYNTNNIMDIDDHHNRQPEQQQRTNMSDECRTTPPNRLTKETDDNDLNDEETSRRRIDHDSDNGDMDSEPPMHKRQKMDSEEVEQRSSPASSPNHMQKISNIESKSTHDVNDHDDDTNSKDRKSCTPDSSSHNTSTSSPAKSEDNCTESHVTASSPQSQAMPKLRLNALLASDPALMPDAKDLKVVHESQAQQRKQQRMQQQQQHEREIDSPASHLVAPGTIPTVVEPLIKAQPTPPVEVAPPRMKVFMCVPCGIGFSSPSTLEAHQSYYCSHRHKDNDEDSVPSASALADKTSTSPATQANVANATPAVAGGPEPAAKAPKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSSNSNNGGAVGGSAAALLEDNTSQQIDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTEGQLTPKLEVSTTTSTTPKANSVHSGAISPQTRTKTPTPAMVAAAAAAAAAAALQQPPSTPFLALPTNPILIIPYSLIRSASLIAGPLQSPSPSVVNPDTTCFTLDGGQLKPLATALNINALSAANNLVGAAAAASSVQQQQQYMVDSTRQTSSSSNESLLTEKNVRRNIEEPAENTPKRKGEGLRDSAPLDLSLRRSPIAALLQRQQRLTAAAAASFLESANSEHHPNRLDMETLLEAGKENLVLDDTGSITPEQIVCAPSLPNSPSMSPSPRRRAISPRSSGAGSTSSMSPPATIPPTAASASNPTNIFDNLHLRSMLPAELLNPLLANKNLELALKLSAAAAAAAVSSSNSAAAQPGTTPAELAAAAVAAAASGRGALLGLPVLPPTAAASGPAQPATPAAANQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEASEGETKISSTPPMATAASPAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGAVAAAAAAAAAAVAVANPDAAPLVLPAKEKCTKCKTVHEFGLPCPPPPALVQQPAAQTPVAPPSANVATAAGSNNSSSSVVTGHNQNVYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKSTDLNEEHFMACILEDESIEIPSAASLNQEHLVQQHQQQQKHLQQQVAAAAAVAAGLQQQQQQQQHQQQQSQSPAQQVFNCDICNYSSTYKGNVLRHMKLVHPHIITNSPSISPEAGDLEASETNSLSGSHNGDNGLNSFTIKSEPLDHPPPPTVGNTTPVILLNPHDNNHSPLPNIGQHPVHGNDFASHHIKTEPMEIAVGGEGPPPPPSISMSITPALRSPAIGPPPPLNSTPEENINNQKYCQTCDISFNYMKTYLAHKQFYCKNKMRRPDSNDSPSPNPTAGIGSPNALMMQKNKENLQQEAAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -