Mdom005024.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- -
- Assembly
- GCA_000371365.1
- Location
- Scaffold19649:60249-62921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.2 1.1e+02 3.3 0.9 1 23 255 278 255 278 0.93 2 9 9.3e-06 0.00046 20.2 0.9 1 23 285 308 285 308 0.96 3 9 2e-05 0.00099 19.1 2.9 3 23 318 339 317 339 0.97 4 9 0.29 14 6.0 0.0 3 23 354 375 352 375 0.94 5 9 0.0051 0.25 11.6 9.8 1 23 381 403 381 404 0.96 6 9 2.5e-05 0.0012 18.8 1.4 1 23 412 434 412 434 0.98 7 9 1.7 82 3.7 0.4 2 23 442 466 441 466 0.92 8 9 0.00088 0.044 13.9 0.8 1 23 472 494 472 494 0.95 9 9 7.4e-06 0.00036 20.5 1.6 1 23 500 522 500 522 0.99
Sequence Information
- Coding Sequence
- ATGTTATCTTGGCAAGAGCTAAAGTATCACTGTCGAACATGTttaataaaattggaattttacgAGGAAAATGTTCAGGATACGAAAAAGTTTGTTGTGATATCAAAATTTCCCGATGTACAGCGGCTAATTGGCCTGTGTCTAACAACAAGGACAAGTTGTGGACTTGAGGATTTGGAATCGCATATGCCGAATTTGTGTCGAGTATGTTTTGAGAAATGGGATGAATTTTCACGTCTATACCAATTGTTATTGAAAACCAATGAGAAATTAAAGAAACTAGCAAGGACATGTTCACCAAATGACTCCGTGTACACTGGGACTATCGAAGAGGAAAATAAAATCTTCATAGAAACAGAGACAACGGCAAATTTAATTGAAGTGGAAAAGTATGAAACAAGTTCACCTTTCTATCAAGACAGTCGTTCAAATTCCATGTTGGAACCAGTCGCAGAGCAAAATAATATAGATGAAACACCACTCAGTGATGAAAATGTCAGTTCAATTTCACCATCAAAATACGACATTAAAACAGATACTTCGCAAGACTCAGATTCGGATAGTACTTTTCCAGATAGAAATGATGATTTTAACGCGACCAGTGAAACCCCAACCGATGATACCAAGGAAACAATTACAAAGCCAAAGCAAAGACGTGGTCGTAGAAGAAATCCTCCAAACGATAGAAATACTCGGCTGCATATTACAGCCAAAGCTTGTCGCAATAAATATGCTAATGCTGCGAATGCGAAAAAGGCTCTTTATCGCTGTGAACCATGTAAAAAgtatttctatgaaaagatgCGCTACGAAGGACATGTCAAAATTGTACACGAAGGTGTAAAGAAGGGTTACGAATGTCAGGAATGTGGCAAAGCGTATAAGTTCTACAAAAATCTCACCGAACACATTACCAGTAATCATTCTGCAAGCCCTTCTGAAAATCTGCTATGCCAGTTATGCAATAAACAAttcaaaacacaaacaacacTCAAGAATCACATGAAAATTAAACATCCCACAGATCCGGAAAGTACGATCAACAGTCGGCGTGTTATATGTGACCAATGTGGTTTTCTTGCGGCCAGTGTTGAGTCATTAACGGCTCATATAAAAAACCTACACACCGAGGCAGAACATTTCAAGTGCGAACAGTGTCCCAAGGTATTCAAGTGCAGATATTATCTGAAGCACCACACCATGACTCATCACAGCGAAGTTAAAATAAAAccttttaaatgtaatttttgcgAGATGGCATTTTCTAGACGTAATGGCCTCACCAAACACGAATTGACACATCTCGATTATACGGAGCGGATAAAGTGTGATTTTGAAGGATGTGATGTTCGATTTTTGAATACGGATGCGAAAAAACGTCACACCCGCCTGGTGCATTTAAAGGAAAAGCAGCATATATGCGATATTTGTGGTGAAGCTTTTGGTATTAAAGCCACACTGCGACATCATCGGTATATTCATACAGGAGAAAAGCCTTACAAATGTCCGGAATGTGGCCAAGGTTTCAGACAGCATACTGCGATGAAGACACACGCCAAAACCCATTTGAAAGCAGCCAAGACAATTGTACAATCTGCTGAAGCGGTGCAATAG
- Protein Sequence
- MLSWQELKYHCRTCLIKLEFYEENVQDTKKFVVISKFPDVQRLIGLCLTTRTSCGLEDLESHMPNLCRVCFEKWDEFSRLYQLLLKTNEKLKKLARTCSPNDSVYTGTIEEENKIFIETETTANLIEVEKYETSSPFYQDSRSNSMLEPVAEQNNIDETPLSDENVSSISPSKYDIKTDTSQDSDSDSTFPDRNDDFNATSETPTDDTKETITKPKQRRGRRRNPPNDRNTRLHITAKACRNKYANAANAKKALYRCEPCKKYFYEKMRYEGHVKIVHEGVKKGYECQECGKAYKFYKNLTEHITSNHSASPSENLLCQLCNKQFKTQTTLKNHMKIKHPTDPESTINSRRVICDQCGFLAASVESLTAHIKNLHTEAEHFKCEQCPKVFKCRYYLKHHTMTHHSEVKIKPFKCNFCEMAFSRRNGLTKHELTHLDYTERIKCDFEGCDVRFLNTDAKKRHTRLVHLKEKQHICDICGEAFGIKATLRHHRYIHTGEKPYKCPECGQGFRQHTAMKTHAKTHLKAAKTIVQSAEAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -