Mdom004566.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- RREB1
- Assembly
- GCA_000371365.1
- Location
- Scaffold1209:2125-38422[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.058 2.9 8.2 1.1 1 21 219 239 219 241 0.93 2 12 0.00037 0.018 15.1 0.2 1 23 251 273 251 273 0.98 3 12 2.6e-05 0.0013 18.8 7.5 1 23 279 301 279 301 0.98 4 12 0.5 25 5.3 1.6 2 19 532 549 532 549 0.96 5 12 0.0098 0.49 10.7 0.1 1 23 706 728 706 728 0.97 6 12 2.1e-05 0.0011 19.0 1.2 1 23 738 760 738 760 0.99 7 12 0.00092 0.045 13.9 2.0 1 23 766 789 766 789 0.97 8 12 0.0033 0.16 12.2 2.0 1 23 1158 1181 1158 1181 0.95 9 12 9.5e-05 0.0047 17.0 0.3 2 23 1541 1562 1540 1562 0.97 10 12 0.16 7.9 6.8 6.3 1 23 1568 1591 1568 1591 0.97 11 12 0.013 0.66 10.2 0.6 3 23 1772 1792 1770 1792 0.95 12 12 0.0015 0.073 13.2 4.8 1 23 1798 1820 1798 1820 0.99
Sequence Information
- Coding Sequence
- ATGTTGGCCACATCGCAACACACCCCCACCACCAATTCCACAGCTGAAAGTTCCGCAACTCATCCAGCAGCCATTAAAATGGAAAGACGTGATTCGGCCACCTCGGAATCATCGTTGGAACATTTAGATTTGGGACGCACACCAAAGAAACTACAGACAGCCACCTCCACACCcctggtggtggcggcggcggcggccAGTGATAAGGTCAACTCAGAGGTCGCCTCAAATACCCAAAGATATTTGCAACATAAAATGCAAGATTCCGATGAGGCCAACGACTACGATGACGAAGAGTCGGCCGACGAGAAGCCACAACAGCGCCAGCACACAAGCCATCATCACAAGCGACGTTTGGCATCGCGCAACATTTTGGACAAGCGGACCAGTGTACACATTGAATACAATGCCGATAATCCGAATTCGCTGCGCAAAAAGTTTCGCTTCAATCTCAGCGCCATCGATCACAGCAACGAATCGGGTTTTGTGGATGCCAGCAATAGTCAGCTGCTGAACAACACCTCGGCGGCGGCGGTGGCGTCGGCGGGTAATGGCAACAAATCGAATAGCTCATCGGCAGCCTCGACACCGCCACACCAGCAAAGTACGGGTGGAAATTCCAGTGCCGATTCAGCACCCGGTGAGGACATGAAATATCTCTGTCCAATTTGTGAGGTAGTCTCTGCCAATGCTCATCAGTTCACCAATCACATACGTTGCCACAACTACACCTCGGGGAATACGGAGAATTTCACCTGTCGTATTTGCTCAAAGGTACTCTCATCTGCCTCATCGTTGGATCGTCACGTTCTGGTGCACACCGGCGAACGACCATTCAACTGTAAATATTGTCATCTCACTTTTACCACAAATGGCAACATGCATCGCCACATGCGCACCCACAAACAGCATCAGCATACCCATCATCGGCGCAACTCGAATGGAACAAAGTTCAACtccaagacaacaacaacaacgaatgcCACAACTCCATTAGGCAATGGACAATTAAATGAAGGCGTTAAATTATCAACGCCTTCGGCAGCAGCAGctgtagcagcaacaacaacaacaccgcatGATAATCACATTGAAACGTCAGCGATTAATGCctccgccaccaccaccgcaacaacaacaacaacgacaggtGCTAATGACAAGCGATTAAATGGTAACGCTGAAACTTCAGCCATGGAAAGTTATGAAAGTGATGGCGGCTGTTcaacagacacatccacgggtcaacaccatcacaacaacaacaacaataataataacaacgatttgaaaattaacaacaacaattacaaacgTAAGCTAAGTAACGATAATGATGAACATGAtctcgaacaacaacaacagcaacaacgccaACGGGAAATCCCACAAAACCCCGAAGAGTTGCTGAAACAACAACTCAAAGCTTTGGCCACCTCCCTCGCAACAAATGGTGAAAAAACATCCGCAACCaccaccaataacaacaacaacaacgaatctTTAATCTGCCCCATCTGCAATGAGGATGAATTTAGCAGTGTCACCGCCCTGGATCAACACATGGATGCCAAACATCCAGAAATACCAGCCAAATGTACCAACTGCGAGGTCATCTTCAGGACCCATCATCAGCTCAGCATGCATCCCTGCACAGCTGACATCAAGCCCGAGCGGCGAGAACATTTCAGTCCCAGACCACGTCATTCCCGGGACAATTCCCTTGACCACTGTGCCCGCGAAGACGACGATAACGACACACACGAGGATAACACCAACGAAGAGCAACAACATCGACGAGAGGAACTCTTCCGCCATCTGCAGCTAAGAAATATGATGGCCCAAGCTGCCAACTCCTCACCTTCATCCCATCACAACATCGAATTGACCGAAGATGACATTAAATCGGAACCCTCGGCTGGCCATGATTCCAAAGATTTGGCCGATATTCAATCGATTTTGAACATGACCTCGTCGTCGAACACCTCAAATTTCCTCAAGAACTTTGAACAATCGGTCAATACACCCTCCTCCCAATTCAGCTATGATCGTGACGAGGAAGAGGCCCAGGATGTATTCACCGCCGAGTTCCGTAAAATGAAATTGCGCGGCGAATTCCCCTGCAAACTGTGCACGGCAGTGTTTCCCAATCTGCGCGCCCTCAAGGGTCACAATCGCATCCACCTGAGCGAGGTGGGCCCAGCCGGTCCCTTCCGTTGCAACATGTGCCCCTATTCGATTTGTGACAAGGCCGCCTTGGTGCGTCACATGCGCACCCACAACGGCGATAGGCCCTATGAATGTGCCGTCTGCAATTATGCCTTCACCACCAAGGCCAACTGTGAACGGCACTTGCGCAATCGTCATGCCAAGACCACACGGGAAGATGTCAAACGTGCCATCATCTATCATCCCTCCGAGGATTCCAGCTGTGATGATCCCAACAAGAAGCAGCATCTATTCTCATCACCAGAAATCGATGACGACAGCGAATACTACAGTCATCAGCCCCATCCCAAGGATCGCTCGACGCCCGTTTCTCATCTCAAGGAAATGTTGACTCAAGGTGGTGGGGACCACAGCACCAATAAGCCCGTCAAAATTCAAGTGAAGAACCTCAACGAGCTGCTGGACAAATCTTCGGCTTCGTCTGGCTATGGCGATAGCTACAATGACAAACGGGCCGTGGACAATAACATTTCGTCCTCGTCATCATCAGCGGCTCCCATTGACATGAGCATGGATGTTTTGGATTTGAGCAAGAAACCCAACAATACACAAACGAACGCACAAAATCCACCCGAACCCAAGGTGGCCTTGGATGCCCCACTGCCTTTGCTGCAAAAGGACAATGCAATGCCTACGGTATTGCCATCGGCTACAGCCACGGCGAAAACTGATGAAGCCAACAAGCCGGCCGATTTGTCGGCattggaaaaacaacaacaacaatttctaaTGGGCCCCCAACCCTGGCTCAGTGATCCTGCCCAGTATCTGCAACAACTATACCGTATACAGTTACTCTTCCCCCAACTCAATCCATTCCTCATGCCCAATTCTCCTTTCATGCCGAATAATttggatttccaaaaattggcTCCCTTCTTCAGgaccatgttgggcgccacaggagctgctgctgccgccaaCGCAACGCCATCTCTGGCCGATTTGGAAAAACTCATGAATCCAGCAGCATCGCTGCCGGCAATGCCACCAATGAGTCCGCTGATGTCGGAGAAATCCAATGGCCAGCCATTGGCTTCGTCCAAGCCAGCTGGTCTGCTCTCACCCAATCCCAGCCATCTGAACATTCCCCGGCATGTTGTCAATCCCTCGGCAATGGCCGGCTCCCAGCCGCCCCACTTGCCGCCCACCATGTTGTCCAACGGCCCCGTTAAAATGGTACTCAAGAATGGTGTCTTTATGCCGAAACAGAAACAACGTCGTTATCGCACCGAACGTCCCTTTGCCTGTGAACATTGCTCGGCCCGCTTCACCCTGCGTTCGAACATGGAACGACACGTCAAGCAGCAACATCCTCAATACTATGCCCAGCGCCAACGTAGCGGCCATCATGTTATGCGTGGACGTGGTGCCAGCAGTGCAGCCAATATGAATGGCATTAGCCATTTGCAAGCCGCCGTAGCTGCCCAAGCCCACTTCGGCTCCAATGCCAGCGCCAATCATTCACCCATTTCCGATCAAGTCAAGTATGCCATATTGACACAGCAACTGAAGGCCCGCAAGGATCCTGATTTGTTGCAGCAGGCCTTGGTGCATGGCTCAAATAGTGTGGCCAACTCGAACATGTTTTTGGGAGGTCTTAACGCAAATGGCAACCCTGCCGGGTATCCCAATTACGGATCGTCGACTCAACATCCACATCTGAGTAGTCAAAATGGCACCCCAAATGGTTCAATGGAGgatgatgagcccaaactcattatcgatgaggatgatgacgatgaggatgccgatgctgatgatgtggaggaaatccatgatgaCCAAGATTTCGATTTTGACCACAGTGACATACAGTTGATGGATAAGGACCAAGGAGtggataatgatgatgatggagatggacatgacaatggtgaggacgatgatgatgctcgtgagcgcaatgatgCTGTGGAGGAACATAACTTGCCTACCACCGTGGAAGAAGTCAAGCTTAAAAATGAGACGAGCGAGGAACCCAAGGAGGCTGCCAAAAAAGTGGCTGAATCTATTTTGGAACAAGCTATCAAGGCTGGACCAAAACCCGCCACCGAAGTGGTACCACCAAACAGCACCCTGAAATCAATGATTGCTCAAGCGCCAGCTGTTGGCAAATCCCTCAAAGAAGTGGCCAGTTCGGCATTCAAAGATGAATCTCAGGACTTGGTACCGGTGGCCAAACTGGTGGACAATGCCACCAGCAACTCGGTGTCGTTTAACAACTATTTCCGTCCCGGAGATGCTGCCAATCACATGGATCAGAGCGATGAAGAGGGCCTGGTGGCCTCGGGCAGTGCCAGTGAaagcaacaattccggtgctgAAGATGCTGCCAGCGGTGTTCCCACCAAGAAGAAGTCAGCTTACAGCTTGGCGCCCAATCGTGTCTCGTGTCCCTACTGTCAACGCATGTTCCCCTGGTCCAGCTCTCTGAGGCGACACATCCTTACCCACACCGGGCAGAAACCCTTCAAATGCTCACATTGCCCGCTCCTCTTCACCACCAAGAGTAACTGTGATCGTCACTTGCTGCGCAAGCATGGTAATGTGGAATCGGCCGTCTCCGTCTATGTACCCGACGAGGATGTCAACGAACCCATTCCCCTGCCCAAGTCTGTGGAGGAAATCGAGAGGCAACAAAGGGAACGTGAAGAGGAGGAAAAACGTCGCCTGGCCGAGGAGAAGGAGAGGGAACAAAAGGAAAAAGAGCTGCGCGAAAAAGAACAGCAGTTGGAACATGAACGCCAACAACGCCAGGCTCTGCTCAAGCAGTTGGCGGCAATGCAGCACATCAATCAGTTTCAATTGAAAGCGGAAACCGCCTTGGGTGTTTCCTCCTCAGAGTTGCCATACAAATGCCATTTGTGTGAGAGTTCCTTTGCCGAGCGGGCCCAGTGTCTGGACCACATTAAGTGTTATCATTTGCAAGAATACGAACTGCTGGTGTCCAAGGGCGCCATTGACAATGATGCCGATGCGGCTGCTCAAATCCAGTCGAACGAAGAAGAGGAACGCCAGCGAGCCAACGAAGATGCCACCAAGGGTGGCAAGTATCCGGACTACAGCAATCGCAAAGTGATTTGTGCCTTTTGTTTGCGCCGCTTTTGGTCCACCGAAGACCTGCGCCGTCACATGCGTACCCATTCCGGCGAACGGCCGTTTCAGTGTGAAATTTGCCTGCGCAAGTTTACGCTGAAGCATAGCATGTTGCGTCACATGAAGAAGCACAATGGTGGCCTGAATATGAACGGTTCTGCCCATGGTATGGATGGTCTGAATAATGGCAACAGCTGTTCCGACTATTCGGATGATGAGCAGGGTGGCGGACCGGTGGGACCACCGGCCATGACAAATGCCAATCTTAATGCGTTGTTCATGGGTTCCAAGATCCAGGAGTTGTTGAGCAAGACCTGTGAATGGGGCAATGGTGGTGCCGGTTCAGTGCTGCGAGAACGTAAGCAAAATCTGGCCGATGATAATGGCATGCATCAGCCACAGTCAGATTTGATTGGCAATCTGTTGGGCATCAGTGACCAGGGTATTTTGAATAAGTTAATGTCATCACCGGATGAGGCAGCCAAGCTGTTGGGAGTTGAAAAATAA
- Protein Sequence
- MLATSQHTPTTNSTAESSATHPAAIKMERRDSATSESSLEHLDLGRTPKKLQTATSTPLVVAAAAASDKVNSEVASNTQRYLQHKMQDSDEANDYDDEESADEKPQQRQHTSHHHKRRLASRNILDKRTSVHIEYNADNPNSLRKKFRFNLSAIDHSNESGFVDASNSQLLNNTSAAAVASAGNGNKSNSSSAASTPPHQQSTGGNSSADSAPGEDMKYLCPICEVVSANAHQFTNHIRCHNYTSGNTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHTHHRRNSNGTKFNSKTTTTTNATTPLGNGQLNEGVKLSTPSAAAAVAATTTTPHDNHIETSAINASATTTATTTTTTGANDKRLNGNAETSAMESYESDGGCSTDTSTGQHHHNNNNNNNNNDLKINNNNYKRKLSNDNDEHDLEQQQQQQRQREIPQNPEELLKQQLKALATSLATNGEKTSATTTNNNNNNESLICPICNEDEFSSVTALDQHMDAKHPEIPAKCTNCEVIFRTHHQLSMHPCTADIKPERREHFSPRPRHSRDNSLDHCAREDDDNDTHEDNTNEEQQHRREELFRHLQLRNMMAQAANSSPSSHHNIELTEDDIKSEPSAGHDSKDLADIQSILNMTSSSNTSNFLKNFEQSVNTPSSQFSYDRDEEEAQDVFTAEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSEVGPAGPFRCNMCPYSICDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREDVKRAIIYHPSEDSSCDDPNKKQHLFSSPEIDDDSEYYSHQPHPKDRSTPVSHLKEMLTQGGGDHSTNKPVKIQVKNLNELLDKSSASSGYGDSYNDKRAVDNNISSSSSSAAPIDMSMDVLDLSKKPNNTQTNAQNPPEPKVALDAPLPLLQKDNAMPTVLPSATATAKTDEANKPADLSALEKQQQQFLMGPQPWLSDPAQYLQQLYRIQLLFPQLNPFLMPNSPFMPNNLDFQKLAPFFRTMLGATGAAAAANATPSLADLEKLMNPAASLPAMPPMSPLMSEKSNGQPLASSKPAGLLSPNPSHLNIPRHVVNPSAMAGSQPPHLPPTMLSNGPVKMVLKNGVFMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYAQRQRSGHHVMRGRGASSAANMNGISHLQAAVAAQAHFGSNASANHSPISDQVKYAILTQQLKARKDPDLLQQALVHGSNSVANSNMFLGGLNANGNPAGYPNYGSSTQHPHLSSQNGTPNGSMEDDEPKLIIDEDDDDEDADADDVEEIHDDQDFDFDHSDIQLMDKDQGVDNDDDGDGHDNGEDDDDARERNDAVEEHNLPTTVEEVKLKNETSEEPKEAAKKVAESILEQAIKAGPKPATEVVPPNSTLKSMIAQAPAVGKSLKEVASSAFKDESQDLVPVAKLVDNATSNSVSFNNYFRPGDAANHMDQSDEEGLVASGSASESNNSGAEDAASGVPTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSVYVPDEDVNEPIPLPKSVEEIERQQREREEEEKRRLAEEKEREQKEKELREKEQQLEHERQQRQALLKQLAAMQHINQFQLKAETALGVSSSELPYKCHLCESSFAERAQCLDHIKCYHLQEYELLVSKGAIDNDADAAAQIQSNEEEERQRANEDATKGGKYPDYSNRKVICAFCLRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHNGGLNMNGSAHGMDGLNNGNSCSDYSDDEQGGGPVGPPAMTNANLNALFMGSKIQELLSKTCEWGNGGAGSVLRERKQNLADDNGMHQPQSDLIGNLLGISDQGILNKLMSSPDEAAKLLGVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -