Mdom010163.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- -
- Assembly
- GCA_000371365.1
- Location
- Scaffold18776:4636-9439[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.017 0.82 9.9 0.2 1 23 239 262 239 262 0.95 2 10 0.0062 0.3 11.3 0.5 1 23 352 375 352 375 0.95 3 10 0.00051 0.025 14.7 1.7 1 23 407 429 407 429 0.96 4 10 0.00023 0.011 15.8 3.0 3 23 437 457 435 457 0.97 5 10 0.0047 0.23 11.7 1.1 1 23 475 497 475 497 0.95 6 10 5.6e-05 0.0028 17.7 0.9 1 23 505 528 505 528 0.98 7 10 5.7e-06 0.00028 20.8 0.8 1 23 533 555 533 555 0.96 8 10 4.8e-05 0.0024 17.9 3.0 2 23 559 580 558 580 0.97 9 10 2.8e-06 0.00014 21.8 0.1 1 23 586 608 586 608 0.96 10 10 0.00016 0.0082 16.2 7.0 1 23 614 636 614 636 0.98
Sequence Information
- Coding Sequence
- ATGGATATAAACGATGAGCTGAGCAATGGACCGGCTCTAATACGATCATGCCGCACATGCATGACGGAGGATAGTCGCTACTATCAAATCTATGACTATGTGGATGAGAATCACTCGATCATGGAAATGATTGATGCCATTGTGCCGCAAATCAACATTACAACGGATGATATTGAGTTCTCCACATTGATTTGTGAGACGTGTGTCAATAATCTTCTGGTTGGCTATCAATTTCAACAGCAATGCATTGCCATCGATCAAGAGTTCCGCCAGCAAATTTTGGCGCCACCCGAAGAAGTGTTGGTGGTAAATGCGAAAGAAGATCTCACCATGGAGGATGAAAGTATGGAGGAAACGAAAATTGAAGTTTATAACTTGAATTGTACAGATGAGGATGTGGAGGCCAAAGAAGAGGAACGGGAGGCTGTGGAGGTACATGTCGAAGAGGAAACGGAAGAAATCCGTGAGGAGCAGGAGGAGGAAGATGAGTGTACGGAGACCATACTGGGCGAAGAAGACAATGAAATCCACCAAGAAGAGGAATTACTTGAAGCTTCAATGAAAAAACTTGATGAATTGGACAGCTCGTCGGAAAacattgatgatgatgacaatgagaTCACACCAGAAGACATCGATGAGAATGAAAACACAATTATGGACTGTGAGTCCACATTGCCGCTTAAAATAATTCAAGTTGATCGCAAAAAACGTTACACCTGTGCCGTGTGTGGAAAACAATATGATCGGGTATCACGCATTGAAGATCATTTGGAAAGGAGGCATAGATATTCCATTGATGATATCAAAAGATGGGTGGAAATCGTCGACGGCAGTGGGAATGTTATGAAACGGGAAAAAATGAGGAAAGATAAAGAAATGCAAGAGAGACGCTGTGAAGAAAAAGAATATGAAAAGGCCATGAGCAAGATAATCCAGATCAAAGAAGAAAATGAGCCAGACGTTCAGGTTGGCGAAAATTCTAAAGAAAccaaagatacaaatgctgaTCCAAATCCCTTGTCTATTATTAAGATTGgCGGACGCAAACGATTTAAATGTGGAGACTGTGGCAAAATCTATGATCGCATTATACGCATGCGTGAACATTTAAAGAATCGGCATAGCTATGACATGAAAGATATCAATAATTGGTATGTCCTTGCTGAAAATGAAATGGACTTGTCGGATTCAAAAATTAAACCCGAAGATGGCCTGTATACATGTGAGGAGTGTGGCAAACAATTCTGTGAAATATATCGCCTGCAACGCCACAGTATTGTACATTcagtgtttaaaaaatatggctgtGAAATATGTAAACATCGTTTTGTTTCCAAACAAAACTATCGCAATCATATGAAACTTCATGAAAATGCAGACAATGAGACGACGACCACCACACCCCCAACTCCAACCGTTTACACATGTCCCGAGTGTGCCATGGTGTTTGGTAATCGTAATTCATTGTCGGCCCATTGTAAAAGGCATTATACCACCACAGAGAAGAATTTCACCTGCCTGGAGTGTAATCGGGAGTTTATCTCGAAGAAAACCTTAAGTGAACACATAAAGCGAGTGCATCCCAACATCACATATGCCTGTGAACACTGTGATCGCACCTTTGGCTTGCCCGATCATTTGGAACGTCACATGGGCGTTCATCGTGATATAAAATGCAAAGTATGTCACAAAAAATTTACCACAGTACAAACGCTCAACGATCACATGAATCTGCATACCGGTGAATGTCCCTATCTGTGTCCGGAATGTGGCAAATCATTTCCATTTGCGGGTAGTTTAAGGCAACATTTAGCCAGACATTCATTGGTCAATCAATTTCATTGTTCGCAATGCGGTAAGGGTTTCAAATGCAAGGCGAATCTCAAGAAACACATGAAGTCCCATTTGGGCAAAAGACATAGGCGTATGGGCTTTGCAGCGGCAGATGAAAACAATCTGCAAAATGACGAACAAGAATCTGAAGTGGAGGATGGAGACGATGGAGGTATCGAAGAACAATATAATGTCACAGCTTTGGAAGATGATTCATGGTAA
- Protein Sequence
- MDINDELSNGPALIRSCRTCMTEDSRYYQIYDYVDENHSIMEMIDAIVPQINITTDDIEFSTLICETCVNNLLVGYQFQQQCIAIDQEFRQQILAPPEEVLVVNAKEDLTMEDESMEETKIEVYNLNCTDEDVEAKEEEREAVEVHVEEETEEIREEQEEEDECTETILGEEDNEIHQEEELLEASMKKLDELDSSSENIDDDDNEITPEDIDENENTIMDCESTLPLKIIQVDRKKRYTCAVCGKQYDRVSRIEDHLERRHRYSIDDIKRWVEIVDGSGNVMKREKMRKDKEMQERRCEEKEYEKAMSKIIQIKEENEPDVQVGENSKETKDTNADPNPLSIIKIGGRKRFKCGDCGKIYDRIIRMREHLKNRHSYDMKDINNWYVLAENEMDLSDSKIKPEDGLYTCEECGKQFCEIYRLQRHSIVHSVFKKYGCEICKHRFVSKQNYRNHMKLHENADNETTTTTPPTPTVYTCPECAMVFGNRNSLSAHCKRHYTTTEKNFTCLECNREFISKKTLSEHIKRVHPNITYACEHCDRTFGLPDHLERHMGVHRDIKCKVCHKKFTTVQTLNDHMNLHTGECPYLCPECGKSFPFAGSLRQHLARHSLVNQFHCSQCGKGFKCKANLKKHMKSHLGKRHRRMGFAAADENNLQNDEQESEVEDGDDGGIEEQYNVTALEDDSW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -