Basic Information

Insect: Musca domestica
Gene Symbol: -
Assembly: GCA_000371365.1
Location: Scaffold18858:162471-167798[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.02 0.98 9.7 0.6 1 23 306 329 306 329 0.96

2 11 0.00073 0.036 14.2 0.7 1 21 398 418 398 419 0.96

3 11 0.0032 0.16 12.2 0.5 1 23 426 448 426 448 0.98

4 11 0.13 6.4 7.1 1.1 1 23 451 474 451 474 0.93

5 11 6.5e-06 0.00032 20.7 1.4 2 23 481 502 480 502 0.98

6 11 5.2e-09 2.6e-07 30.4 1.3 1 23 508 530 508 530 0.98

7 11 0.00032 0.016 15.3 0.3 1 23 536 558 536 558 0.98

8 11 5.6e-07 2.8e-05 24.0 4.0 1 23 564 586 564 586 0.99

9 11 0.0053 0.26 11.5 1.4 1 23 592 614 592 614 0.98

10 11 0.0016 0.077 13.2 4.5 1 23 620 642 620 642 0.99

11 11 0.06 3 8.2 1.1 6 23 651 669 649 669 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.02	0.98	9.7	0.6	1	23	306	329	306	329	0.96
2	11	0.00073	0.036	14.2	0.7	1	21	398	418	398	419	0.96
3	11	0.0032	0.16	12.2	0.5	1	23	426	448	426	448	0.98
4	11	0.13	6.4	7.1	1.1	1	23	451	474	451	474	0.93
5	11	6.5e-06	0.00032	20.7	1.4	2	23	481	502	480	502	0.98
6	11	5.2e-09	2.6e-07	30.4	1.3	1	23	508	530	508	530	0.98
7	11	0.00032	0.016	15.3	0.3	1	23	536	558	536	558	0.98
8	11	5.6e-07	2.8e-05	24.0	4.0	1	23	564	586	564	586	0.99
9	11	0.0053	0.26	11.5	1.4	1	23	592	614	592	614	0.98
10	11	0.0016	0.077	13.2	4.5	1	23	620	642	620	642	0.99
11	11	0.06	3	8.2	1.1	6	23	651	669	649	669	0.95

Sequence Information

Coding Sequence: ATGGATGTTGACACTGGGAAGATCTGTCGATGTTGCCTAAGTTTGAATTCTAATCCTCTCCTTTCGATATACCAATCAGATGGTGCCGGCGGTTGTGTGGCAAACATGATAGCTTCTATAACCAACTTAGAGCTTCGGCAGCATGACAAAATGCCCGAAAAGGTCTGCCTGTCCTGTGCTAGTGAGATAAATCGTTGCTATGTGTTTAAGATCAAATGTGAAAGCTCCAATAAAACTTTGAGACAATTGCTGCCGGATGTTGCTGTGGAATGCGATTCGCTTGAGAAGAATTCCGTGAGGGCTATTGGAATACAAACGGATGCTGTATGTGTGAGGAGTACACTATGCCAAACACTGGATTTTGCAAGTACTACAATGAAAACAAAGGAGGTTCAAACGGAAGCGGTTACTTACAATGAATCCAACGAAGAAGGCGCTAATGAGGGGTTGCAACTCACACATTGTGGAGACGATGCCGGCTTTTGCGAAAATAGGGAAAAAGAACGGACTGCCTTTAAAACATTACGTTCTGAACAACATTTCTCTTTGGTTACAAGTGAACACAGTGAAAATGGCGAGTCATACATTGTGGTGGAGACTGACAGTATTAATAACGATGAGTCTAGTATGCCGGAAGAGCACAAGTATCTTGTTCAGGAAAGTGTTGATCCTGCCGGCGATGAGATTATTGAAAACAATGAGGAGACATCCTCTTTTGACTTTTATGAAGATATGGAGCAGAATATGCCAGAATACAGTGAGACAAAATCTTACAATGGTGTTGGAAACGAGTGTATCAACCAAGCGAACGATTATAGAGCTGATGATGCTAATGAACAATATGCTAACGAAACAGGTGTGCAGACCGACATTGCTTCAAAAAGATTGCGTTCTTCTGGAAAGCGAAAGGAGCAACACAAATGCCCCATGTGTATAATGGCATTTGTAAGTTTAAAAGTGCTAAGACGCCACATTGCCAAGCGACACTCGAGCGTTGACATAGACGACGCCGTCTCCAAAACAGCCTATACCGCTGAAGTACAACAAGAAAGCGAAGAAAATTTGTCTAATTCGGATGTGGTTACAGATTCGCAACAAGAATTAACCGAAGTAAATGTTCCCAAACCTCGTCTTTTATCCCGAACTAGACATTCAAATAAGCTCAACGAACAACAATACTCCAGTTTCAAGTTCTATTGTGAATATTGCCAAGCTGGATTTGCCCAAAGGAAGACATTGACATACCACATGAAACAGAACTGTATGACTAGTAATTTTAAATGCGCCCAATGTGAACGCATTTTTATATCGAAGGAAAAATTAGACGAGCACAATCTGACACATAAAAATCATCCATGCTTGGAATGCAAACACGTGTGCGATAGTGTTGAAGAATTGAGTGAACACATGATTGAGGTTCACAATCGAAATGCCCGAAATCAGTGTCATGTCTGTAAGAAAGtatttacgATGAAAGCGTCTCTTATTGACCATTTGCGTGTGCACAGTGGTGATAAGCCATTTGTATGCACCATTTGCGGTAAGCgttttacacaaaattccaatttACGCCAACACATAATGCGTCATCAGAACAAAAAGGATTTCATGTGCGATCTTTGTCCGAATGCCTATGTCACTAAGGCAGAATTGTTTTCACATAAGCGAACGCACACCGGAGAAACACcatttaaatgcaatttttgcaATACCAGCTTTACTTCGTCCTCCTCTCTACAAAAGCATGTTCGAAAACACACTGGGGAGCGGCCATATTCCTGTGACATCTGTCCCATGAGATTCACCGCCCTGAACATCCTTAAAAATCACCATAGAACACACACGGGTGAGCGGCCGTACAAATGTCTATTCTGTGAAAAAAGTTTTACGCAAAAAGGCGATTGCTTACTACACCAACGTACTCATGAGTTTGGCGAGATTAAATGCTTTTGTGGATCAACGTTCTCGAAAATAAATAACCTAAGGATACACTTGAAAGTAAAGCATCCAAATATGACCGATGAGGAAATTAGATCAATAAATGATCTACTGAAAGTCAAGTGCAACAAGGAAGAAGATACTGAAACACACATAACGCTGATGGAAGTAGGCGATGATGACGAGGGAGAAATGACATTGAATACCTCACGCGTAGATAATGGCGAtgaaatgacggaaatagctatgtaa
Protein Sequence: MDVDTGKICRCCLSLNSNPLLSIYQSDGAGGCVANMIASITNLELRQHDKMPEKVCLSCASEINRCYVFKIKCESSNKTLRQLLPDVAVECDSLEKNSVRAIGIQTDAVCVRSTLCQTLDFASTTMKTKEVQTEAVTYNESNEEGANEGLQLTHCGDDAGFCENREKERTAFKTLRSEQHFSLVTSEHSENGESYIVVETDSINNDESSMPEEHKYLVQESVDPAGDEIIENNEETSSFDFYEDMEQNMPEYSETKSYNGVGNECINQANDYRADDANEQYANETGVQTDIASKRLRSSGKRKEQHKCPMCIMAFVSLKVLRRHIAKRHSSVDIDDAVSKTAYTAEVQQESEENLSNSDVVTDSQQELTEVNVPKPRLLSRTRHSNKLNEQQYSSFKFYCEYCQAGFAQRKTLTYHMKQNCMTSNFKCAQCERIFISKEKLDEHNLTHKNHPCLECKHVCDSVEELSEHMIEVHNRNARNQCHVCKKVFTMKASLIDHLRVHSGDKPFVCTICGKRFTQNSNLRQHIMRHQNKKDFMCDLCPNAYVTKAELFSHKRTHTGETPFKCNFCNTSFTSSSSLQKHVRKHTGERPYSCDICPMRFTALNILKNHHRTHTGERPYKCLFCEKSFTQKGDCLLHQRTHEFGEIKCFCGSTFSKINNLRIHLKVKHPNMTDEEIRSINDLLKVKCNKEEDTETHITLMEVGDDDEGEMTLNTSRVDNGDEMTEIAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -