Mdom013017.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- -
- Assembly
- GCA_000371365.1
- Location
- Scaffold6:517721-524194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.01 0.49 10.6 0.1 3 23 27 47 25 47 0.96 2 16 0.0012 0.061 13.5 3.3 1 23 53 76 53 76 0.97 3 16 0.035 1.7 8.9 0.2 3 23 81 103 79 103 0.88 4 16 0.00081 0.04 14.1 0.1 1 22 111 132 111 132 0.95 5 16 1.4e-05 0.00067 19.7 0.7 1 23 140 162 140 162 0.97 6 16 0.0001 0.0051 16.9 3.5 1 23 168 190 168 190 0.98 7 16 0.00013 0.0062 16.6 1.5 1 23 196 218 196 218 0.93 8 16 0.32 16 5.9 0.8 1 23 674 697 674 697 0.95 9 16 0.036 1.8 8.9 1.7 1 23 721 743 721 743 0.95 10 16 2.4 1.2e+02 3.1 2.1 1 23 751 775 751 775 0.90 11 16 1 49 4.3 1.5 3 23 781 802 781 802 0.97 12 16 0.026 1.3 9.3 0.2 2 21 814 833 813 834 0.92 13 16 0.00025 0.012 15.7 0.8 1 23 842 864 842 864 0.98 14 16 9.7e-06 0.00048 20.1 2.0 1 23 870 893 870 893 0.97 15 16 2.7e-05 0.0014 18.7 0.6 1 23 899 921 899 921 0.98 16 16 0.0002 0.0099 16.0 2.1 1 23 927 949 927 949 0.95
Sequence Information
- Coding Sequence
- ATGGctaCCACATCGAATACATCtcaaatggaaatgttggtgaaaatatCAGCATCCGATGGTGTACCAAAACTCTTTTGTCCAATATGTAATAAGGCTTTGGTCTCCCTTCAAGGCTATGTGAAGCATGTTAAAAAACATGAGCCACCCGGAGGTTTTATGTGTCGCTTCTGTGATGCACGATTCTGTTCGGAAGATGAATTGAAAAAACATCGTGAAACTCAACACACCACCATTGCCTGTCGCCTGTGTAAGGATACAACGTTTACAAATGAAAGTGATTATCGTGCCCATATACGTGACGTCCACCAGGGTGTCGATCGGGAGTTgtataaatgtgaaaaatgtggAGCAGCTTATAAAACCTTGGATCCATATCGGCGGCACATCGAGACAGATTGTGGTGCCATTAAACCCTTTAAATGTGATAAATGTCCCATGGCATTTATGacgaaatataatttaaaggcCCATTTGGATAATCATTCGGGAGAATTGAAATTCTGTTGTAGTTATTGTGGCaggaatttcaaacaaaaagccAGATTGGTGGAACATGAACGGACACATACGGGAGAGAAGCCTTATAAGTGTGATgTGTGTGGAAAGAGTTTTTCCCATCGGGAGAGCATTGTTACACATTCTTCATTACACACTGGAATACGTTTGGTTGAATGTAAATGCTGTAGTTCGAGATTTTCCTGTTATTCAAATCTAATTAAACACCGAAGAAATAGGCCAGATACATGTGGTCGACCAGAATATGATCCGCCACGCAACCGCATTCGAAAACACACCTCAAGAATTCCAGCCGttttaaatccaaattcggAAATAAAAGTTGTAAACGTCAACAAAATCATAAAACCCGAAGACTTGGAAAAGGCTCAGGCATTGAAAAAAGAATCCCCAGATAAGGCAAAAGAAAAGACTACAGCACGCAAACGTACAGGTGGTGCTTTGAAAGGGGCAAccaaaaagacaacaacaaagaaaatgcTTTCCAAAAAAGACATTATCGAATTTGAGGAAAGTGATGAGGAAGAATTTGTATCGATTGGGAAAAATAAGTGCGATGAGGACGACGAAGAAGATGAAGATGAAAAACCACTTACAGAATTAATAAAGAGTGAACGACCGGAAAGACAATGCAAATTAAAAACATCAACGAATATCGCTGAAGGAGAGCAAACTACTGTAGAAGATCCCATTTTAAAACCTCTGATACCTATGGAAGCTGAGCCCTCCATTAACAGAACCACAACAGCATGGTCGGATGACAGTGAAGATGATTATGTACCCGATTTTgagaatgatgatgatgaagaatcCGATTATGATacacaagaaaacaaaaatttccaattaccGGTAAAAATCAAAGAAGAATCTAAAGAGGATACAACACTCATACAAATAGAAGCTCTTAATGATCTTGAGTTCACCTCCTTGCCTATCGACACAAATGTTGTGAAGTCTGAAATTGAagatgcgaatatttttaatgaaaaggaTAAGATTCTGGCATGTTTGCTAAACGAAAGTGGGATTAACGTATCTAATCAGTCATTATCTATAGCCTCAGCTAAACAATCTGAAaaagatgacgatgatgaagaatatattctAGAAGAGACTGAGGTGGTATTGGTAAAAAATGAAGACAGCCACGATGAGGATTATCCATTGGAAGACATCTTGGATATAAAATCAGAGtttctTCCAATGTCGGAAAATACGGTAGATCAAAAATGTTATGTATTGTTGGAAGATATTACAAATCGTTATCCTCAGCTGAAGACACAATCCAGCATTAAGGTTCCTCGCAATTGTCAGCCTTTcttttccaaaagaaatgatACGAAAAAACGCACGCGAAAACCCAGGGAAGCTAAAAGCACACAGCAATCAACAGCAGATAAAGATTCGACCAGTACAGACAAACCAAAACGAAAATCTAAAATAACAGCTGAACAGCTGAAGGAACGTATGCGCCTCTTAAAGAAACGTGATAAGACTTACAAATGTCCGGATTGCATTAAGCTGTACTATATGCGAAAACCATTTGAAAAGCATTTGCGAGATGATCACAACAAAAACGATGAAGAAATCAAAGAGTTGCTAAAGGATGAAATTGAAGAATTGCCCACAGAAGATATTTACAAATGCCACATCTGTGATAAGATATATCTGATGGAGAAACGTCTTAAAGATCACATAGCCAAACATGGTCCAGATGGTAATCTAATACATAAATGCCCATGTTATTGTGTCTTGTATTTTGCCACACGTGAAGAGGCCCAGGCTCATGCCCACGAGGCACACAAAGATCTGTTGTGGTGTGAAATATGTGAGAAATTCATGACAGGATGTGATGCTTTGAAATCGCATAAAATGCGTATACACGGCACCAAAGAGGTACAATTTAAACGTAATTTGGTGTGTGACAAATGTGGCAAGAAATTCTTGGGCAGGACACAGCTAATGGATCATGTACGCTCAGACTGTGGCCGGGTTCCCATTTACCAGTGTCAGGTATGTGGTAAATGTTTAACAACTGCTGGTATCCTCAAGACCCACATGCTACTGCATCAGGATGACCGTCCCTATCAATGCGATCAGTGTGGCAAAAGTTTCAAGATCAAGGCTCAATACAAAACTCACATCAAATATTCCCATTCAGAGGAAAAACGTTTCAAGTGTCATCTTTGTCCCAAAGCCTATCCTTATCGCGAAAGTCTGCTAACACACATGGCAGTTCATACGGGCATCAAACGTTTCTTGTGCAATGGCTGTGGTAAACGTTTTACATGTGTTTCCAATTTGCAAGCCCATCGTAAGGTACATGCCGAAACTTGTGGTCTGCTTCCCTTGAATGCCAAGGCCACCCAATATATGGGGGTACAAAAAGGCACGCTTTTGTTGGGTGCCAAACCGGAGCCCGGTCTGGATTATGTTGAATCTCAAACATTGGTGGCAAAAGAAGTATTTACACAAGATGTTCAGGCGACCACTGAAGATGTGGCACGCAGCATGCAACCTAGCAATTCACTAAGTGCTGGCCTTCCGCTTAATTATAGTACAGATATTATACTAATGTAA
- Protein Sequence
- MATTSNTSQMEMLVKISASDGVPKLFCPICNKALVSLQGYVKHVKKHEPPGGFMCRFCDARFCSEDELKKHRETQHTTIACRLCKDTTFTNESDYRAHIRDVHQGVDRELYKCEKCGAAYKTLDPYRRHIETDCGAIKPFKCDKCPMAFMTKYNLKAHLDNHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSLHTGIRLVECKCCSSRFSCYSNLIKHRRNRPDTCGRPEYDPPRNRIRKHTSRIPAVLNPNSEIKVVNVNKIIKPEDLEKAQALKKESPDKAKEKTTARKRTGGALKGATKKTTTKKMLSKKDIIEFEESDEEEFVSIGKNKCDEDDEEDEDEKPLTELIKSERPERQCKLKTSTNIAEGEQTTVEDPILKPLIPMEAEPSINRTTTAWSDDSEDDYVPDFENDDDEESDYDTQENKNFQLPVKIKEESKEDTTLIQIEALNDLEFTSLPIDTNVVKSEIEDANIFNEKDKILACLLNESGINVSNQSLSIASAKQSEKDDDDEEYILEETEVVLVKNEDSHDEDYPLEDILDIKSEFLPMSENTVDQKCYVLLEDITNRYPQLKTQSSIKVPRNCQPFFSKRNDTKKRTRKPREAKSTQQSTADKDSTSTDKPKRKSKITAEQLKERMRLLKKRDKTYKCPDCIKLYYMRKPFEKHLRDDHNKNDEEIKELLKDEIEELPTEDIYKCHICDKIYLMEKRLKDHIAKHGPDGNLIHKCPCYCVLYFATREEAQAHAHEAHKDLLWCEICEKFMTGCDALKSHKMRIHGTKEVQFKRNLVCDKCGKKFLGRTQLMDHVRSDCGRVPIYQCQVCGKCLTTAGILKTHMLLHQDDRPYQCDQCGKSFKIKAQYKTHIKYSHSEEKRFKCHLCPKAYPYRESLLTHMAVHTGIKRFLCNGCGKRFTCVSNLQAHRKVHAETCGLLPLNAKATQYMGVQKGTLLLGAKPEPGLDYVESQTLVAKEVFTQDVQATTEDVARSMQPSNSLSAGLPLNYSTDIILM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -