Basic Information

Insect: Musca domestica
Gene Symbol: -
Assembly: GCA_000371365.1
Location: Scaffold19850:56365-58400[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.044 2.2 8.6 1.1 2 23 27 48 26 48 0.96

2 11 7.6 3.8e+02 1.6 0.1 12 23 157 168 156 168 0.87

3 11 2.5e-06 0.00012 22.0 3.4 1 23 174 196 174 196 0.99

4 11 0.00013 0.0062 16.6 1.4 2 23 269 290 268 290 0.97

5 11 2.5e-05 0.0013 18.8 2.4 2 23 306 327 306 327 0.97

6 11 7e-06 0.00035 20.6 1.3 1 23 333 355 333 355 0.95

7 11 0.0004 0.02 15.0 0.3 1 23 361 383 361 383 0.96

8 11 0.00025 0.012 15.7 0.8 1 23 389 411 389 411 0.96

9 11 0.00073 0.036 14.2 3.7 1 23 417 439 417 439 0.98

10 11 1.2e-06 5.7e-05 23.0 1.0 1 23 445 467 445 467 0.98

11 11 7.9e-06 0.00039 20.4 0.5 1 23 474 496 474 496 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.044	2.2	8.6	1.1	2	23	27	48	26	48	0.96
2	11	7.6	3.8e+02	1.6	0.1	12	23	157	168	156	168	0.87
3	11	2.5e-06	0.00012	22.0	3.4	1	23	174	196	174	196	0.99
4	11	0.00013	0.0062	16.6	1.4	2	23	269	290	268	290	0.97
5	11	2.5e-05	0.0013	18.8	2.4	2	23	306	327	306	327	0.97
6	11	7e-06	0.00035	20.6	1.3	1	23	333	355	333	355	0.95
7	11	0.0004	0.02	15.0	0.3	1	23	361	383	361	383	0.96
8	11	0.00025	0.012	15.7	0.8	1	23	389	411	389	411	0.96
9	11	0.00073	0.036	14.2	3.7	1	23	417	439	417	439	0.98
10	11	1.2e-06	5.7e-05	23.0	1.0	1	23	445	467	445	467	0.98
11	11	7.9e-06	0.00039	20.4	0.5	1	23	474	496	474	496	0.99

Sequence Information

Coding Sequence: ATGGACAAATATTTGGAATACATCAAATGTGGAGACGTACTTATATCTCCCAATTTGAATAGCAAACAATACATCCTCAAATGCGTCGAGTGTGATCAACACTATGCAATATTGGATTCATTGCTTCATCATTATATGGAACATTGCAGCGTAACGGACGAATGCATTGAGATTGCTGCCAATATTACTGACCCACTTAATATGATCCCGTCGGTTCATGATCtagaaaataatctaaaaattgaaattctggAACCACTCGACAAAGTCAATGAGAACCAAAAGGAAACAATAAATATTGTGAATTGTAATTCAGCTGCTGAGCAAGTCCAAAGCGACCAAAATGAGTCGAGTGCAAGTAGTTGTGACGAAAGAGACTCTGAATATTCGTCTATAGGGAACACAGAAACATCTCTACATGGTGTCACAAATGAAGATAGCCCTGCAAGAAAATGTCTTAATCCAACATCGCCCAAAGGCCTGAAAAGACACAGAACAGTGCATACTTCCAAAGGCACATTTCAATGCGAAGATTGTAAAAGAActttCAAAACAATGAGAACGCTCAATAATCACCTTAAAACACACAAAAGTTTTGAACCTCTTAACAATACTACAAGGATCGAAGAAAGGTGTGATGAAGGTGACATCGACAATTTAACCTTTGGAAACAAATGCCAATTAATAGACACAGATATGTCATATAAAACTGAAAGGGCTGAAGAAGAAAACATAAACCATTCCACCGATAATATGGATACGgaagaaaatcaaaaacaacaGGAAGACAATACAAATAGATTAACTTGTAATCAATGTGGAAGCGAATTAAAGACACGCAAAAGTCTTAAAAGGCATTTACGTATTCACATGCGAGAGACTGATGGGAGAATGCGTAACAAATCTGCAAAAAATGagtgtggattttgtaaaaaggTTTTCCATCAGTCCAGTTCCCTGAAAGACCACCTAAGAGTTCATACAGGAGAGCAGCCTTATCTGTGTTCGGAATGTGGTAAAGCTTTTAAGAGCCTGAGTAACATGAAACAACACTTTTTACGCCATGGCTCCGATCGTCCTTACGAATGTCCTGATTGTCCGAAAAAATTTCCCTGCCTTAGTGATTTGGCCTCCCACAAGGCAGTACATACGAAGACTAAATCTCATGTATGTGATATTTGTGGCAGTGGCTTTGTCAAGCCATATCTCCTTAAGAAGCACAAACTGTATCACGCCAATGAACGGAAATTTTCGTGCGAATTTTGTGAAAaacgatttgtCCTCGCTGACCAATGTCGAAGACATATGCGAACCCATACGGGTGAGAAAccatataaatgtaaatattgtgtCCGTTCCTTTGCCCAGAGTAATGATTTAATAAAGCATTTAAGAGGGCATTTGGGAGCTGATAGTGTCTATAAATGTGAAATGTGCCCACAAGGATTTCGTTTGCAAAGTGAGTTAAGAGCACATTTCAATACGCACAAGAATGATGATGAAGAAACGAGACAAAGAAATCTGCAAGCGCTCAAAGATGATGAACTGAGAATACAAATGAAATTTGGCCTTGTGCCAAAAACATAA
Protein Sequence: MDKYLEYIKCGDVLISPNLNSKQYILKCVECDQHYAILDSLLHHYMEHCSVTDECIEIAANITDPLNMIPSVHDLENNLKIEILEPLDKVNENQKETINIVNCNSAAEQVQSDQNESSASSCDERDSEYSSIGNTETSLHGVTNEDSPARKCLNPTSPKGLKRHRTVHTSKGTFQCEDCKRTFKTMRTLNNHLKTHKSFEPLNNTTRIEERCDEGDIDNLTFGNKCQLIDTDMSYKTERAEEENINHSTDNMDTEENQKQQEDNTNRLTCNQCGSELKTRKSLKRHLRIHMRETDGRMRNKSAKNECGFCKKVFHQSSSLKDHLRVHTGEQPYLCSECGKAFKSLSNMKQHFLRHGSDRPYECPDCPKKFPCLSDLASHKAVHTKTKSHVCDICGSGFVKPYLLKKHKLYHANERKFSCEFCEKRFVLADQCRRHMRTHTGEKPYKCKYCVRSFAQSNDLIKHLRGHLGADSVYKCEMCPQGFRLQSELRAHFNTHKNDDEETRQRNLQALKDDELRIQMKFGLVPKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -