Mdom013950.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- -
- Assembly
- GCA_000371365.1
- Location
- Scaffold18852:299194-305329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.1 2e+02 2.4 1.2 3 23 272 293 270 293 0.88 2 18 8e-05 0.004 17.2 3.0 1 23 326 349 326 349 0.95 3 18 0.00018 0.0091 16.1 1.6 1 23 358 380 358 380 0.98 4 18 0.0026 0.13 12.5 0.2 1 23 386 409 386 409 0.96 5 18 0.17 8.6 6.7 0.2 2 23 414 435 414 435 0.95 6 18 0.02 0.99 9.7 1.4 2 23 444 466 443 467 0.94 7 18 2.1e-06 0.0001 22.2 0.2 1 23 473 496 473 496 0.97 8 18 0.0002 0.0098 16.0 0.5 1 23 502 524 502 524 0.98 9 18 8e-05 0.004 17.2 6.4 1 23 530 553 530 553 0.98 10 18 0.017 0.86 9.9 0.3 2 23 864 886 863 886 0.94 11 18 0.00049 0.024 14.8 5.9 1 23 919 942 919 942 0.94 12 18 0.0021 0.1 12.8 2.1 1 23 951 973 951 973 0.97 13 18 0.00083 0.041 14.0 0.2 1 23 979 1002 979 1002 0.97 14 18 0.12 6.1 7.2 0.3 2 23 1007 1028 1007 1028 0.95 15 18 0.01 0.51 10.6 0.5 2 23 1037 1059 1036 1059 0.95 16 18 0.004 0.2 11.9 0.1 1 23 1066 1089 1066 1089 0.96 17 18 2.5e-05 0.0012 18.8 0.4 1 23 1095 1117 1095 1117 0.98 18 18 5.5e-05 0.0027 17.7 7.2 1 23 1123 1146 1123 1146 0.98
Sequence Information
- Coding Sequence
- ATGTACAACAATAAATCATTGTGCCGCCTGTGCGTGTCCTCGCAATCAGAATATAAAAGCCTGTATGACGACAATGGCCAAGGAAATGAAGTTTACGAAATTACTCTGAAATATTTTGATCCAATATTACTAAGTCCTGCAAATGAACAGGATTCAAAAGTTATATGCTTGGAATGCTGGCATCATATCAGTGAATTTTATGGTTTTCAACAATCAGTGCTTCAGGCTCAAGCCGTACTGCAGGCCCAGTTGGAGAACGATGTTAAACAGCTAGTTCCTGAAGTTAAGTTGGAAGAGGAGGTATTGCAGGAACCACTACAAATCAGAGAGATAGCTACAGcggaaattccaatttttaatgaTAGCCTTAAGAATGAAAATATCACCTCAGATAAACATGACTTTGGCAGCGACTATGAAGATGACTTTAGGGATGACAACCCCTTCTCCACTGATGACGATGAAAAGCCTCTTATAGAACACATAAAtagattgaaaaataaaagtaagACGAATAAGCAACAAAATAATGACAAATCATTAGAGACGCCGATGGCTGTTAGGAAGCCAAGAAAACCTAGAAGCccaaacaagaacaaaaaacaaaaggagACAGAACATACAACCAATAGAAGACGGAAAGGAAGGCCTAAGAAATTACAAATTGAGCATGTGGAAGATCAAATCAACGACCCCAATGCTTCCGCTAATGAAATGGAAGATGATGACGGTTCTAATAGTGAGAAGAAATCCGTAAAGGAGAAAACAAAAGAATGTGATGAATTTATTGCACAATGGAAACAAGAATTGGAATGTGTATGTTGTCCAACAACGGTTGCAAATTTTACACTACTTCGCAAACACTTTCGACTAATGCACCCAACAGAAAAATGCTACGTTATATGCTGTCAGAGGAAATTTTACCATCGATTTCACATTGTCGAACATATACGACTACATATTAATCCTAATGCCTTCAGATGTGATGAATGTGGAAGATGCAGCACCAATAGCCGTAACTTGGCCaaacataaaaaagaaatgCACACAGAAGAGGGTAAACAACGTCCGTTTGAATGTGATGTTTGTCATAAGAAGTTTGCCAATAAAACCATTTTACGAACCCACATGGAGGTACACGAAGCCGGTCGCGATTATGTATGCAGCGAATGTGGCAAAGGGTTTCCATCGGAAAATCGGCGCAAAATTCACGAGCGAATGGTACATCAAGCCGATCGGGTATGTGATCAATGCGGCAAGACCATACATGGTATTTATGCCCTTAAACTGCATTTGATGGAACATGCCGgctacaaaaaaccaaaatggcCTTGCGATGAGTGTAACGCCCAACTGAATTCACATTCGAGTTTAAAACGACATAAGCTAATAGCCCACCACGACGGTAGTACGGTTTACATATGCAGTGAATGTGGCAAGGTGTTTACATCAGAGAACGCATTGCGAAGTCACAAGAGAATTGTTCACTTAATAGAACGAAAGTTCAAATGCAATATATGTGAAAAAGCCTTTAAGTTTCCGAAAATATTACGTGAACATATGGCATCACATACCGGCGAAGATCTCTATCAGTGTCCGCACTGTCCGAAAACATTCAAGGTTAGCGCTAATATGCATCATCATCGAAAAAAGGTCCATCCAAAGGAATGGGCTGAAGCTAGGATAAATAAACCGGTAACGAAAAAAGTAGATATAGCTTTGGTATCCAATGaaattattatAAAAACTCTAATTTCTCTTGTTtgtttaataaacaaatgtgGAAAAGTTAGAAAAGTAAATATGGATAAATCAACTCTATGCCGATTATGTGTGGAAATTTGCGCCGATTGCAAAAACCTTTACGACGAGGATGGCAGCAGTACACAAGTGTACGAAACAACTGTAAAATATTTCGATCCCATGTTATTAAGTTTGGAATTGGACAAATCTCTCACAGTGATTTGTTTGCCATGTTGGAGGCATATCAGCGATTTTCATGAATTTCAGCAGACCGTGTACAATGCCCAAACGAAGTTGGCATTTGATATGAAGCAAGCCGACATCAAGACTGAAGACGATTCGCTTAACGAACACATTCCGCTGGACATTGTTAAGGAGGATCCGGTGGAAAGTATGCTGATCGATCAATCACTCAACGTTACCACAGAAGATGATAAATATGAGATATCTCTGCCCGAAGAATTTTATGACGAACCTCATAATTCCGTTGAATTTACTTCAGACGACGAAAGACCATTGCTAGAATGTCTaaagaaaaccagaaagaaacgtaccaaaacaaaaagtccgaataaaaaggaagacaatggcaaaacTCCTAAGAAACGTGGAAGGAAGCCGAAATGTGCTGATGTCAACAAGTCCAGTGAAATTGATGTAAACAGTTCCAAGAATCAATGTGATTCTTTTCCGTATGGAGACAATTCTCAAGATGGGCATTTATCATCATCAATTGGTGGCGACACCGATGACAATTCTGTCGGAAAACCACCAGCGAAAAACGTTGGCAGACAACGTAGAACCCAGGAAATAGATGAATTTATAGCTCAATGGAAACAAGATTTGGAATGTGTCGTTTGTGGTCAACTTTATCCGAATCTTACGTCGCTGCGGAAACATTTTCGAGAATTCCATCCCAAACAGAAATGCTATATTACCTGCTGCCAACGCAAACTACGTCATCGTTTTCATATCGAAGAGCATATTCGCATTCATTTAAATCCCGATGCCTTCAAGTGTGATGTTTGCGGCAAATGCTGTACAACGAGCCGGAGTCTAAATAGTCACAAGCTTGAAAAACATACCGCTGAAGGCCAAGAACGAACATTCGAATGTCCTATATGTCAGAAACGATTTGCCAAGAAAACTGTCTTAAAATGTCACATTGAAACGCACAAAACTGGAACGGATTATGTGTGCAGTGAGTGTGGCAAAGGATTTGCAACGGAACAGCGCCGCAAAGTTCATGAACGAACCGTACATAATGTTGATCGAGTTTGTGATCAATGTGGCAAGACCATCCACGGTATATATGCCCTGAAACAACATCTACTAGAACATCAGGGCATTAAGAAGCCAAAATGGCCCTGTGATATATGTAATGCCCAATTGTATTCACATTCCAGTCTTAAGCGTCACAAACAAGTGGCGCACAATGACGGCAGCACAGTATACGTCTGCGGTGAATGCGGAAAAATTGCTGCAACCGAAACAGCACTGCGCAGCCACAAGAAGTATGTCCATCAAGCTGAACGCAAACACAAATGTACAATATGCGATAAAGCCTTTAAAGTGGCTGTTGTTTTGCGCGAACATATGGCTACGCATACCGGCGAAGATCTGTATACATGTCCGCACTGTCCCAAGACGTTTAAAGTCAGTTCCAACATGCATCATCATCGGAAAAAGGCACATCCCAAAGAGTGGGCGGAAGGCAGATTGAATCGGCCCACAATAGCAAAGGTTGATATCAATCAAGTATCAAACGAAGTGGTATTGTAA
- Protein Sequence
- MYNNKSLCRLCVSSQSEYKSLYDDNGQGNEVYEITLKYFDPILLSPANEQDSKVICLECWHHISEFYGFQQSVLQAQAVLQAQLENDVKQLVPEVKLEEEVLQEPLQIREIATAEIPIFNDSLKNENITSDKHDFGSDYEDDFRDDNPFSTDDDEKPLIEHINRLKNKSKTNKQQNNDKSLETPMAVRKPRKPRSPNKNKKQKETEHTTNRRRKGRPKKLQIEHVEDQINDPNASANEMEDDDGSNSEKKSVKEKTKECDEFIAQWKQELECVCCPTTVANFTLLRKHFRLMHPTEKCYVICCQRKFYHRFHIVEHIRLHINPNAFRCDECGRCSTNSRNLAKHKKEMHTEEGKQRPFECDVCHKKFANKTILRTHMEVHEAGRDYVCSECGKGFPSENRRKIHERMVHQADRVCDQCGKTIHGIYALKLHLMEHAGYKKPKWPCDECNAQLNSHSSLKRHKLIAHHDGSTVYICSECGKVFTSENALRSHKRIVHLIERKFKCNICEKAFKFPKILREHMASHTGEDLYQCPHCPKTFKVSANMHHHRKKVHPKEWAEARINKPVTKKVDIALVSNEIIIKTLISLVCLINKCGKVRKVNMDKSTLCRLCVEICADCKNLYDEDGSSTQVYETTVKYFDPMLLSLELDKSLTVICLPCWRHISDFHEFQQTVYNAQTKLAFDMKQADIKTEDDSLNEHIPLDIVKEDPVESMLIDQSLNVTTEDDKYEISLPEEFYDEPHNSVEFTSDDERPLLECLKKTRKKRTKTKSPNKKEDNGKTPKKRGRKPKCADVNKSSEIDVNSSKNQCDSFPYGDNSQDGHLSSSIGGDTDDNSVGKPPAKNVGRQRRTQEIDEFIAQWKQDLECVVCGQLYPNLTSLRKHFREFHPKQKCYITCCQRKLRHRFHIEEHIRIHLNPDAFKCDVCGKCCTTSRSLNSHKLEKHTAEGQERTFECPICQKRFAKKTVLKCHIETHKTGTDYVCSECGKGFATEQRRKVHERTVHNVDRVCDQCGKTIHGIYALKQHLLEHQGIKKPKWPCDICNAQLYSHSSLKRHKQVAHNDGSTVYVCGECGKIAATETALRSHKKYVHQAERKHKCTICDKAFKVAVVLREHMATHTGEDLYTCPHCPKTFKVSSNMHHHRKKAHPKEWAEGRLNRPTIAKVDINQVSNEVVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -