Basic Information

Insect: Musca domestica
Gene Symbol: -
Assembly: GCA_000371365.1
Location: Scaffold18931:126282-138712[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 4.5e-06 0.00022 21.2 1.3 1 23 115 137 115 137 0.97

2 20 8.6e-05 0.0043 17.1 0.5 1 23 143 165 143 165 0.97

3 20 3.5e-05 0.0018 18.3 0.4 1 23 171 193 171 193 0.98

4 20 2.9e-06 0.00014 21.8 3.0 1 23 199 221 199 221 0.97

5 20 3.8e-05 0.0019 18.2 4.7 1 23 227 249 227 249 0.99

6 20 7e-05 0.0035 17.4 5.7 1 23 255 277 255 277 0.97

7 20 3.3e-07 1.6e-05 24.7 4.3 1 23 283 305 283 305 0.98

8 20 1.2e-07 6.1e-06 26.1 2.4 1 23 311 333 311 333 0.97

9 20 8.4e-06 0.00042 20.3 5.4 1 23 339 361 339 361 0.97

10 20 1.6e-05 0.00081 19.4 8.4 1 23 367 389 367 389 0.97

11 20 7.1e-05 0.0035 17.4 6.7 1 23 395 417 395 417 0.97

12 20 0.00012 0.0059 16.7 6.6 1 23 423 445 423 445 0.98

13 20 1.1e-05 0.00055 19.9 4.5 1 23 451 473 451 473 0.98

14 20 8.8e-05 0.0044 17.1 7.1 1 23 479 501 479 501 0.98

15 20 6.5e-06 0.00032 20.7 7.6 1 23 507 529 507 529 0.97

16 20 7.3e-07 3.6e-05 23.6 7.7 1 23 535 557 535 557 0.98

17 20 0.00023 0.011 15.8 9.5 1 23 563 586 563 586 0.95

18 20 0.00019 0.0095 16.0 0.5 1 23 592 614 592 614 0.97

19 20 0.00028 0.014 15.5 4.5 1 23 624 646 624 646 0.98

20 20 1e-05 0.0005 20.1 1.6 1 23 652 675 652 675 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	4.5e-06	0.00022	21.2	1.3	1	23	115	137	115	137	0.97
2	20	8.6e-05	0.0043	17.1	0.5	1	23	143	165	143	165	0.97
3	20	3.5e-05	0.0018	18.3	0.4	1	23	171	193	171	193	0.98
4	20	2.9e-06	0.00014	21.8	3.0	1	23	199	221	199	221	0.97
5	20	3.8e-05	0.0019	18.2	4.7	1	23	227	249	227	249	0.99
6	20	7e-05	0.0035	17.4	5.7	1	23	255	277	255	277	0.97
7	20	3.3e-07	1.6e-05	24.7	4.3	1	23	283	305	283	305	0.98
8	20	1.2e-07	6.1e-06	26.1	2.4	1	23	311	333	311	333	0.97
9	20	8.4e-06	0.00042	20.3	5.4	1	23	339	361	339	361	0.97
10	20	1.6e-05	0.00081	19.4	8.4	1	23	367	389	367	389	0.97
11	20	7.1e-05	0.0035	17.4	6.7	1	23	395	417	395	417	0.97
12	20	0.00012	0.0059	16.7	6.6	1	23	423	445	423	445	0.98
13	20	1.1e-05	0.00055	19.9	4.5	1	23	451	473	451	473	0.98
14	20	8.8e-05	0.0044	17.1	7.1	1	23	479	501	479	501	0.98
15	20	6.5e-06	0.00032	20.7	7.6	1	23	507	529	507	529	0.97
16	20	7.3e-07	3.6e-05	23.6	7.7	1	23	535	557	535	557	0.98
17	20	0.00023	0.011	15.8	9.5	1	23	563	586	563	586	0.95
18	20	0.00019	0.0095	16.0	0.5	1	23	592	614	592	614	0.97
19	20	0.00028	0.014	15.5	4.5	1	23	624	646	624	646	0.98
20	20	1e-05	0.0005	20.1	1.6	1	23	652	675	652	675	0.96

Sequence Information

Coding Sequence: atgcaaatatcgcagcaacaacagcagcagcagcagcaacaacaacatcaacagcaagccggcggtactgctggggtggccaatagtggcggcagcaatatgccacaacaacaacagcagcagcaaacaacagagtcgaccataactacaacggccactggagctgtggccactaccagtgcagcaacggcaATTGCCAATACCACCGGCACTGCAGTAGCCACCACAACGGCTGGCGGGGCAGCAGCTGGTCTACTTTTGCCCAAAATGGAGGGTGGCATTGCCGTCGATCAAAGCCAGATAACTTTGGCGCCCGATGGAACGGTTGTCTCCACCGGTGAACATGTCTGCGATATCTgtggcaaaatgtttgccttcCGCTATCAATTGATTGTACATCGTCGCTACCACACCGAACGCAAACCGTTCAATTGTCAGGTTTGCGGTCAGGGTTTCTTTACCTCACAGGATCTAACGCGTCATGGTAAGATTCATATAGGCGGACCCATGTTCACCTGTGTCgtttgttttaatgttttcgCCAATAATGCCTCGCTTGAGCGTCATATGAAACGACATTCGACCGATAAGCCCTTTGCCTGCACCatttgtcagaagacatttgcgcgcaaagaacacttggagaatcactttcggtcgcataccggagagacgccgtttcggtgtcaatattgtgcaaagacctttacacgcaaggaacatatggtgaatcatgtgcgcaagcatacgggagagacaccacatcgttgcgatatttgtaagaaatcctttacacgcaaggagcactatgttaatcactATATGTGGCACACTGGTCAAACTCCTCATCAGTGTGAAGTATGCGGCAAGAAATATACACGCAAAGAACACTTGGCCAATCATATGCGTTCACATACCAACGATACGCCCTTCCGTTGTGAGATCTGTGGCAAAAGTTTCAGTCGCAAAGAACACTTTACCAATCACATTTTATGGCATACAGGCGAAACACCCCATCGTTGTGACATCTGCTCGAAAACTTTTACGCGCAAAGAACACTTATTAAATCATGTGCGACAGCATACGGGCGAATCACCGCATCGTTGCACCTATTGCCCGAAAACGTTTACGCGCAAAGAACATCTAACCAATCATATACATCAACACACCGGCGAAACTcctcatcgttgtgatttctgttcgaaaacgtttacgcgcaaggaacatttattaaatcatgtgcgacaacatacaggcgaatcacctcatcgttgcacctattgtatgaaaacgtttacgcgcaaggaacacttggtcaatcatatacgacaacatacaggcgagacgccctttaagtgtacctactgcaccaaggcttttacccgaaaggatcacatggtgaatcatgtgcgacaacatactggcgaatcaccgcacaagtgtacattttgtgccaagacttttacgcgcaaagaacatctaaccaatcatgtacgccagcatacgggcgagtcgccacatcgttgcagctactgcaaaaagacctttacccgtaaggaacatttgacgaatcatgtgcgcctgcatacaggcgattcgccgcacaaatgtgaatactgtcagaagacattcacacgcaaggaacatttgaataatcacatgCGTCAGCATTCGAGCGATAATCCCCATTGTTGTAATGTCTGCAACAAGCCATTTACGCGCAAAGAACATTTAATCAATCACATGTCACGTTGTCACACCGGCGATCGTCCATTTGCCTGTGAGACATGCGGCAAATCGTTCCCGCTCAAGGGTAACTTGCTCTTCCATCAACGTAGCCATACGAAGGGTCAGGAAATGGAGCGGCCATTTTCATGTGAAAAATGTCCCAAGACATTTATATGTAAAGGTCATTTGGTTTCTCACATGCGTTCTCATTCCGGTGAGAAGCCACACGCTTGTACATTATGCAGTAAGGCTTTTGTGGAAAGGGGCAATTTGAAACGTCATATGAAAATGAATCATCCAAATGCTCCAATGCCACCTCCACCAGTGCCACATCCCATAATACCAGCCGGTGTATTGCCGCagataaaacaagaaataaaaccAGTTTTAAGTGAATTAACTCCATTGCAAACAGCTCCCATTGCACATACCATACAACATATAACAGCTGGTGCTGGAGGTAATACAGTGCAATTGGCCACAGGACTGGTGCCTTTGGTAACATCGACCATAACATCTCATGCCACGCAGAAACAAGCGCCTCCATCACAAGCCCAGCCGGCTgctcagcagcaacaacagttgcaacagcagcagcaacaggtggtgaacagtcatcagcaacaacaacaacaggccgctgcggctgcggcagctgcagcccatcaattgcaacaacatcagcagcagcaccaacaacatcagctaatgcaattatctttgcaacaagcagctgctgctgcggcagctcaacaacaattgcaacaacatcaggaacagcaaagacaacatcatcagcagcagcagcaacaacaacagcaacaaaatcaacaacaagctcatcatcagcaagcagctagcaatgttgttgttgcctcagcccatcaagccaatcaacaacaggccaaccaacagcagcagcaagcgcaacagcaacaacaaccaccaccacaagtgccaaTCGCTTTAATACAAGATCCTGAATTGGCCCGTGCTGCCATGCAACAATTGCAACACATGCCGCCGCCTAATGTTGAACAACATCCAGTTGTTTactaa
Protein Sequence: MQISQQQQQQQQQQQHQQQAGGTAGVANSGGSNMPQQQQQQQTTESTITTTATGAVATTSAATAIANTTGTAVATTTAGGAAAGLLLPKMEGGIAVDQSQITLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCVVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDICSKTFTRKEHLLNHVRQHTGESPHRCTYCPKTFTRKEHLTNHIHQHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCAKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPIIPAGVLPQIKQEIKPVLSELTPLQTAPIAHTIQHITAGAGGNTVQLATGLVPLVTSTITSHATQKQAPPSQAQPAAQQQQQLQQQQQQVVNSHQQQQQQAAAAAAAAAHQLQQHQQQHQQHQLMQLSLQQAAAAAAAQQQLQQHQEQQRQHHQQQQQQQQQQNQQQAHHQQAASNVVVASAHQANQQQANQQQQQAQQQQQPPPQVPIALIQDPELARAAMQQLQHMPPPNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01175490;
90% Identity: -
80% Identity: -