Mdom009229.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- bab2
- Assembly
- GCA_000371365.1
- Location
- Scaffold19510:136741-148483[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-18 9e-15 53.8 0.0 1 43 59 102 59 104 0.95 2 2 2.9 5.2e+03 -3.1 0.2 18 27 160 169 160 170 0.87
Sequence Information
- Coding Sequence
- GCAAAAATGATTGAAAGCGGACATCCTTGGATGGCTGGGGCCACAACGTCTTCGGTAACTGCAGATAGCTATCAATATCAATTGCAATCCATGTggcaaaaatgttggaatacTAATCAGCAGAACCTGGTGCAACAATTGAGATTTCGTGAGCGCGGCCCATTAAAATCTTGGCGTCCGGAGGCCATGGCCGAAGCCATATTCAGTGTACTGAAGGAGGGTTTATCgctgtcacaggctgcccggAAATACGATATACCATATCCAACGTTTGTCCTGTACGCCAATCGTGTCCACAATATGTTGGGCCCCTCGCTGGACGGTGGCACCGATCCCCGACCGAAGGCCCGTGGCCGCCCGCAGCGTATACTGTTGGGCATGTGGCCGGAGGAGTTGATACGTTCCGTTATCAAAGCTGTGGTATTTCGTGATTATCGTGAAATCAAAGAGGAGATGGGTGGTTTGCCGTTTGCCAACGGACAGGCTCATGCGGCCGCCTTGTTTGGTGCCTCACCAGGTGCAGGATCAGCTGCCTCGGCTGCCAATGGCTATCACAGTGCTGCCAAATTGGCAGCACAATCTGCCGCTGCAATGGGTGGCCATCAAGACTCGCCGAGTCCGCTGTCATCGATGACGGAGAATTTGCGACGCCAAATAttgtcacaacaacaacaatcacccATAAATCCAGCTATGAATATCTACAAAGCTCCAGCCTATGTACAGCGATCCGAGATTGAAGATCCCATGATGGCGGCTGGTAAGCAACACTCAGCcagtggggctggagttgctggcagtgcggcaggtgttgctggAGATCGACGTGGTTCTGAGAATTTACCCGATTTAAGTGCTTTAGGTTTGATGGGTCTGCCCGGCATAAATGTCATACCCACAGCTGGGGGACCGGGTTCAGGTTCCAGTGGCCGCTCCAATCATATGCATTCGAATGCGGCAGCTGCGGCCTTCAGCCGTGATTTGGAAAGAGAGCGGGAACGGGAGCGTAatcgtgaacgagaaagggagcatcgtgaacgagagagggagcgggaacgggagagggaaagagaacgtgagcgtgaacgagaaTTAAAGGAGGCCATGCAGGCCCGCCAGTATTGCAATCAATCACGAGGCTCTGCCTCGGGTGCTTCATCCGCAGCCGATATGCAGAAATCCGCTGGCAGCATCTCACCCTATACCCATCAGCATATGAAAAATAACAAGGACCAAATGGCTGTAAACTATGCCTATAACAAACGCTTCCTGGAAAATTTACCACCCGGTATTGATTTTGAGGCCATTGCCAATGGTTTGCTGCAAAAAtcctcagcagcagcagctgcagcagcggcggcggcagcCTCCTCAACGGCCGCAAATAAAAGTCCgcgttttgaggattttttcccCGGACCCGATATGAGTGAGCTGATAGCCAATGCTGAGGCCTCATCGGCCAGTGCACAATTTCCCGCCCAACGTGAGtacaatttgatgaaaatcaaaTTGGAACAGCAGCCGACAGAGGTGCAGCATGAAGATTGA
- Protein Sequence
- AKMIESGHPWMAGATTSSVTADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEEMGGLPFANGQAHAAALFGASPGAGSAASAANGYHSAAKLAAQSAAAMGGHQDSPSPLSSMTENLRRQILSQQQQSPINPAMNIYKAPAYVQRSEIEDPMMAAGKQHSASGAGVAGSAAGVAGDRRGSENLPDLSALGLMGLPGINVIPTAGGPGSGSSGRSNHMHSNAAAAAFSRDLERERERERNREREREHRERERERERERERERERERELKEAMQARQYCNQSRGSASGASSAADMQKSAGSISPYTHQHMKNNKDQMAVNYAYNKRFLENLPPGIDFEAIANGLLQKSSAAAAAAAAAAASSTAANKSPRFEDFFPGPDMSELIANAEASSASAQFPAQREYNLMKIKLEQQPTEVQHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00679401;
- 90% Identity
- -
- 80% Identity
- -