Mdei020920.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000023.1:2743841-2761918[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.75 61 5.0 1.9 1 19 262 280 262 283 0.94 2 10 2.1 1.7e+02 3.6 0.1 1 23 301 324 301 324 0.90 3 10 0.36 29 6.1 1.0 1 15 387 401 387 409 0.75 4 10 5.5 4.4e+02 2.3 0.9 1 12 888 902 888 908 0.66 5 10 0.017 1.4 10.2 2.4 1 23 936 959 936 959 0.96 6 10 6.1e-05 0.005 17.9 1.1 2 23 1113 1134 1112 1134 0.97 7 10 3.4e-07 2.7e-05 25.0 1.9 1 23 1140 1162 1140 1162 0.99 8 10 5.2e-06 0.00042 21.3 1.9 2 23 1168 1189 1167 1189 0.96 9 10 0.00036 0.029 15.5 0.7 2 21 1196 1215 1195 1216 0.94 10 10 0.00088 0.071 14.3 1.6 3 23 1253 1274 1252 1274 0.96
Sequence Information
- Coding Sequence
- atggatgaaaatagtaaaaaacGTAGTCGAAAATCGAAATTGGTGCCGCGGGAATGTTTGGATTCTGATGACGAGAATATAGCAGTTATGCAGAAAGAAATTGAAGAaacattaatacaaataaaaaataaatcaattttgaaAAGATTAAGCAATCCTCCACAGCCAAAACCACTTGAGTTCTCTGTAAAAATTGAAGTGGAGGAAATTGATGAAGTAGCTGATAATGAACCAGATTTGAACATTAAAATTGGTTCTGTTAAAAGTTTGAGCGGGCCAAGTTCACCAGCACCAGCCTTAAAAAAAGGCCCCAATGTTGCTCACTACACAATCTCTCCTGACGTAATAAGGGAAGAATTTGATAAACTGTCACAGGAAACGACGAGTGAAGCAGACAAAAGCATTGAGATaactttgttaaattattttggcaaaaaaaaaattccattAGTTACAAATCCTGTAGATGAGAAATTGCAGAACATATTCAGAAAGAAATGGAGAAATTTTCGTTTCTCTTTTCCTGAAATTCGTGATGTACCCCTTatgtataaatgttatatatgtaatattgctTGGTGGTATCTTTATGACTTTAGAGAACACGTTTCACAACATCCAAATGCCTCCATTGATTTGGAAACTAACTGTCATGAATGTAATGTGATAGCATATCAAGGCGCCGTACCAGCCATGAAGGGTATATGGATTGATTCAAAATGTTGGAGATGCAGTAAAACAGTAGTAGCACATGTTTTTCTCGGAAATGTAAAGACAACTGGTTACAGATGCAGTGGATGCATGGAAAAGTTTTATACTTGTCGATTATTGAAGGAACATGAgagtaattgtttattttacagAGATTCGATACAGGTCCTAGATGAAGGTactatgaattttttttgtaatatatgccCTGTAAAAGTTGGGTCTTATATTGACATGCAGGAACATATGGTATTGCGTCACAGTGTCAGAAGTGACATTCCTGTGGATTGGCACTTAAGAACCTGTGGTAAATGCGAGGTACCCTATCATTTACAAGCATTACATGACTGTGCATATAAACTACCCACAACATCCTGCGAGTTTTGCTTCCAAAAATTTAAGTCCCACTTGTTTGTATTGATACACTTGAACTCAACTAAACATTACTATCCATGCAAAATATGTGGTAAAAAACTCAGAAAGCAATGCATGGAGCTCGAGCATTTGATGGAGCACACAGATAACTATGTCGCATTGTATAAATGTATTCATTGCTCGGACTCAATATTGTTTCCCGATTTGGATATAGTTATAGAGCATAATAATAATTCTCATAGGCGACAATTAAAAACCCTTAGTAGTTGCTATGAAATGGTAGTAGTACCAAAAAGGTTGATTGAAAAAAACAAACTTATCAAACCTATAAAGAGTGAGAAAAAGCAGAAGTCACTGCCATCAGTAGTTgagaaaaattttaatactgCTTGCCAAGGACTATTAGGATTTTTAgatCAAATAGTTGGTAAGGATGGGGAAACAGATTCTGTAGTTACAACAATAAGTGATTGTGACGTTAATGCAGAGGATGGCATAAATGAAAATTCGGACCATCCTAACATAAACTTTGTTGGGACAAACGAAAATGAGAAAAACAGCGAAATCGTTAAGACGAATTGTGGAGATACGCACGACCTTGACAAAAACAGGGAAACTGAAAAGATAAATACTGGAATTGCGCACGACCTTGATAAAAACAGTGAAACCGGAAATACAAATCCCGAAAATAGGAACGATCTTACTAAAAACGGCGAGACCGATAAAGCAAGTCCGGAAATTTTGCTCGACTATGATAAAAACTCTGTAGCAACAGATGAAAATCAAAAAGACAGTGAAATGAAGAAAACAAATACTGAAGAGCTTaacgtttattttaaaataaaaaaaacccgtCAAAAGAGGATTCAAACCATATGTAGACTTATAAAACCATACAGCAGACCTGAAAAACCTAAAAAAGAGAAGAAAGTAATATGGAGACCGAAATGTCGAATCCAAAATAAAGTTAGTACTGATGTGCAAATGCCAGAAAAAACTCAAGAAAATGAAAAGGAAAAATCTTCCACTAAAGATAGTCAGCtcagtgaaaaaataaaaacaaattcacAGCCTCAAATAGTCAACTCTGCTGATCTGGTTATAAAGCAAGAAAAACCTGATGATTATGAAGTTGATACTATCCAAGAACAACCACTTGAGTTCcatgaaattaaaatagaaaataacatGACTATTAAAAAGGAAATCAATTTAGATATACCAGAAgacgatattaataaaaataaaacaactaaTATAGAACCCAGTCAGTACAATGAGATAAATATAGTTgacaaattaaatacaataattaaagaAGAACCTGTCTTTGATGAATACAGCAATGAGCTAGACACAATGAATGTTCATCAAAAAGATAATCAGCAAATGAACTTTCCAATAAATAAGGAGGTAGATGAATTTAGTGCAAATAATCTTAATACTCTTGATGGTGTGTCGACGTGTTCAGATGTTGATCCCATTGCTAATGATGCACCCTTGGCTTCAGATGAAATTGAATTGCAGACTCTGGAGCCGGAAGTTATAGTGTACCACACTTATGGCAAaaaGAAGTACAGATGCAAAAAATGCGGCTTCGAAGGCTTCCATTTCGCTTACAGGGAGCATTTGAAAGGGGATCAGCACATGCGGGCGAGATTGAAACGTCGCCGCATATGTAGATCTCCAAAAAGGTTCGAACAACAGCCCGTACAGCGGTACACTTGCACCAAATGTAACGAAGCGTACCGAACATTCTACAAATACATAATACACTTTAATAAGGTACACGATTATAAGCCGTTGACGTGTCCCAAATGTATGCGGCAGTTGTTGAACGCGCAGTCCTTTCAAAGCCACATCCACACTCATATCAGAGATAGCTTCGTGACTATATATCTGATAAAGAATAAAGGAAAGGAGGAAAATAACAGGCATCAGTGCCAAACTTGCTCCGTCAAAGTTAATACAGCAGACTTCTTCGAACACTGGGAGAGTCATCTGGAAATCGCCAAGGATACTCAGACGTGGAAAGCGTACATTCCCGAGATGGAAAATAAGCCAGATTTGAAGAGGATATTGATACTTCTTCAAGGCCAGGATTCACACTCTAACAGGGGCTTGCCGAACAAACTCAGAGACTGTCACATGTGTATGAGAAGTTTCGAAAGGAAAAACGAATGCAAGCGACATTTCATAGAGCACTTGCTGGCGGACGCGTACCAAGAGAGACACAAGCACGGCTTCCTGAAGTGCCAGATATGCGGCCAGGGCTTCTATACTAGCGAAAGgtatAAACGTCACATGCGCGACCATGCAAGCCTGCCCTTGTACAAGTGCGAGCTGTGCGACAAGGCATTCAGCGACTCCAGCAACTTCACCAAGCACAAGAAAGTGCACAACCTCTCCGTGCTGATATGCGACATCTGCAACAAGAAGTTCACCGGCAAGACACATCTCGAGAAACATATGCTGatgCACCAAAAAATCCAACCAAAAGTCTGCCAAGAGTGCAACAGGGTGTTCTACTCCGAGTCGAGTTATAGGAAGCATATGACAAGAGGGCAAATCCGGTTTAAGTGTAACTCGTGTGAGATCTTCTTCAGCTGCTTGAGAGAAAAGTGGGACCATATGTGGGAGGTACACAAGGAGAGGAAGTTCAAAGCGGACTGTCCCTTGTGCGAGAAGTCCTTCAGGAAGCACCAGGACGTCAGGCAGCACATCCGTTACGAGCACGCCGACTACAACTTCAAGTACGTCCCAAACAAGACGCCGCTAAAAGAGCACAGGCCAGAAGAAGTTGTGGTTATGTACATGAACGAGTCGCTCTGCTCCAATAAAAGCTAG
- Protein Sequence
- MDENSKKRSRKSKLVPRECLDSDDENIAVMQKEIEETLIQIKNKSILKRLSNPPQPKPLEFSVKIEVEEIDEVADNEPDLNIKIGSVKSLSGPSSPAPALKKGPNVAHYTISPDVIREEFDKLSQETTSEADKSIEITLLNYFGKKKIPLVTNPVDEKLQNIFRKKWRNFRFSFPEIRDVPLMYKCYICNIAWWYLYDFREHVSQHPNASIDLETNCHECNVIAYQGAVPAMKGIWIDSKCWRCSKTVVAHVFLGNVKTTGYRCSGCMEKFYTCRLLKEHESNCLFYRDSIQVLDEGTMNFFCNICPVKVGSYIDMQEHMVLRHSVRSDIPVDWHLRTCGKCEVPYHLQALHDCAYKLPTTSCEFCFQKFKSHLFVLIHLNSTKHYYPCKICGKKLRKQCMELEHLMEHTDNYVALYKCIHCSDSILFPDLDIVIEHNNNSHRRQLKTLSSCYEMVVVPKRLIEKNKLIKPIKSEKKQKSLPSVVEKNFNTACQGLLGFLDQIVGKDGETDSVVTTISDCDVNAEDGINENSDHPNINFVGTNENEKNSEIVKTNCGDTHDLDKNRETEKINTGIAHDLDKNSETGNTNPENRNDLTKNGETDKASPEILLDYDKNSVATDENQKDSEMKKTNTEELNVYFKIKKTRQKRIQTICRLIKPYSRPEKPKKEKKVIWRPKCRIQNKVSTDVQMPEKTQENEKEKSSTKDSQLSEKIKTNSQPQIVNSADLVIKQEKPDDYEVDTIQEQPLEFHEIKIENNMTIKKEINLDIPEDDINKNKTTNIEPSQYNEINIVDKLNTIIKEEPVFDEYSNELDTMNVHQKDNQQMNFPINKEVDEFSANNLNTLDGVSTCSDVDPIANDAPLASDEIELQTLEPEVIVYHTYGKKKYRCKKCGFEGFHFAYREHLKGDQHMRARLKRRRICRSPKRFEQQPVQRYTCTKCNEAYRTFYKYIIHFNKVHDYKPLTCPKCMRQLLNAQSFQSHIHTHIRDSFVTIYLIKNKGKEENNRHQCQTCSVKVNTADFFEHWESHLEIAKDTQTWKAYIPEMENKPDLKRILILLQGQDSHSNRGLPNKLRDCHMCMRSFERKNECKRHFIEHLLADAYQERHKHGFLKCQICGQGFYTSERYKRHMRDHASLPLYKCELCDKAFSDSSNFTKHKKVHNLSVLICDICNKKFTGKTHLEKHMLMHQKIQPKVCQECNRVFYSESSYRKHMTRGQIRFKCNSCEIFFSCLREKWDHMWEVHKERKFKADCPLCEKSFRKHQDVRQHIRYEHADYNFKYVPNKTPLKEHRPEEVVVMYMNESLCSNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -