Mdei004160.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000005.1:6208645-6223609[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.22 18 6.7 0.2 2 23 451 473 450 473 0.93 2 10 0.045 3.6 8.9 0.3 1 23 505 528 505 528 0.97 3 10 0.00077 0.062 14.4 3.3 1 23 571 594 571 594 0.98 4 10 8.2e-06 0.00066 20.7 1.5 1 23 598 620 598 620 0.98 5 10 0.058 4.7 8.5 0.4 2 23 628 648 627 648 0.96 6 10 0.006 0.49 11.6 1.3 2 21 655 674 654 679 0.92 7 10 1.2e-05 0.00098 20.1 1.6 1 23 687 710 687 710 0.95 8 10 0.027 2.2 9.6 0.3 1 23 716 739 716 740 0.93 9 10 0.0002 0.016 16.3 2.7 3 23 751 771 750 771 0.97 10 10 5.4e-05 0.0044 18.1 2.5 2 23 778 800 777 800 0.96
Sequence Information
- Coding Sequence
- ATGGACGATTACACAAAAGTAACACTTCAGAAAATCTGTTGTACTTGCTTAAGTATTGATAGAAAACTGCATCAACTATGCAAATTGGACGATggcattaacaatttattttttctactatCGTCGGATTCTGAGGCATATAAGGCCATGTTTAGCAGAGATGCGACATTGCTGTTCATATGTTGGGAGTGCAGCGCCATCATGATTAGACAGAGGAAGTTCATTGAACAAGTTTGTATTGCACAAAAACAATTGTCTCAAATCATAGACCAGCAATTACTTttaaGTTCAGCAATTAGCCtttctaaattaaatagttttcatCAAAACACACATAATGTACATTTTCTACATGTCgataatatagaaaattttgttgATTGCGGACCAgatattaatgatattaaatgTGAACCAGAATCAAACATCAATAACGAATCTGCTAATGATAGCACTGATGAATATAACACTGAACTCATAGAAGACATAAACATAGAAGTATCAGAATGTAGCATAGAAGTAAAGCCTCTTGTAAAGAAAACTAGTGAATTTCAAAAAGAGATTTTAGGTAAAAAAGGTTCTGTTCAAAGAAAAGTTAAAAATGAAACAGATAATGCAATTAAGGAAGATGTTTGTTTGAATGAACAAGAAATAGTAGGCCATGTTGAGATTAAGAAGTTAGAACATAGGAATGTTAATGTGATAAGCATTAATGATACTAAATGTGGATCAGAATCAAACATGATTAACGAATCTGCTGGTGATAGCAGTGATGAATACAACGTTGAActcataaaaaacataaaagtatcaGAATACAGCATAGAAATAACGCCTCTTCGAAAGAAAActagagaattaaaaaaagataatttaagtaaaaaaggtTCCGTTAAAAGGAAATTTAAAGATGAAACAGATGGTGTAGTTGAGAAAAATgcattttctaaaattaaaatgtctGAACATGTAATGGTGGAGTGTGATGAGATCAAAATGTTAGAGGAGAAGAATGTTAACGTGACAAGCATTAATGATACTAAATGTGGATTGGAATCTAACATCAATAACAAATCTGCTAATTATAGCAGTGATGAATACAACACTGAACACATAGATGAGATAAAAGTATCAGATCGTGGCATAGAAATACAGCCTCTTGTAAAGAAAActagagaattaaaaaaagataattcaagtaaaaaaggttctgttaaaataaaagttgaaCATGAAACAGATGATGCAACTAAAGAAGATGGTTATTCGAAAATAATAATGACTGAAGAAGAAATGGTAGAGAGTGTTGAGATTAAGAAGTTAGAAGAGAGTTATGTTAATGCAACAAGCAAATGTGAGTCTTGTGTTGCAGTGTTTAAAGATGAAAATGAATTGGAAGAACATAATTCAAGATTACACGAACAGAAAACAAAATTTGTCAAATGCGACATCTGTCTAGTATATATAAAGTACCAGTGGCTATCAGAGCATAGGGACGGGCACTATCGCAAATACCAGTGTAATTATTGCGAACTAGTGAGCTATACCCTTATTGACATTTTGACCCATTTGAGGGTATTTCACTCGATGAAGGACGCTCTGCCACCGGGGATGTTAAAAAAGCTGAAAAGAAAAGCTATGCTAACGAATCCAGTTTTGGTGCCGAAAAAGCAAAACCAAGTTCAAACGGACGGGGAATCACCTTTAGGATTCAAGTGTAACGAATGCAATAAATATTTCGAGAACAGATACCTGCGTTATAGACACATAATGAGGTCGCATAGGGAGGGGCACAAGTGTCCCACTTGTGGGAAAACGTTCGCTTTGAAACACGCACTGAACATACATCTACTGATTCACTCCGACGCCCCTCCGAAGCAGCCTTGTCCGATCTGCGGTAAGTTGCTCCGCACGGACTGCCTCAGGGTCCACGCCAGGGTCCATTCCGAACGGAAGTCGGTCGAATGCGTGTCCTGCGACAAGCGGTTCATCTCTCACGACTCTTATGAGAGACACCTCAAGTACTCCAGCAAGCACGCCGTAAAGGACATACGCAAATACAAATGTACGATTTGCGAGAAAAGGTTCAGAACTAAGAGAGAGTTGAGCGATCATATCGACTACAATCATATGGGGAGAACGCAGCACAAGTGCCCTATATGTGATAAGCCTCTAGCGACCGGCGCGTCTGTCACCCTTCACGTCAGCAGAGCGCACCACGGCGTTAAGAAGTCGAGGGAGAAGCTTCTGTGTAAAACTTGTGGGAAGGCGTTCACGAACAAGAAGTGTCTCCGCGAGCACGAGCTGATCCATTCGGGCGAGAAGCCGCTATCGTGCGACGAGTGCGGCCGCACGTTCCGGCAGAGCGCGTGCCTTTACACGCACAAGCGGCGCGTGCACAAGATGGCCACCAAGATGGCGCGCGTGTGGCACGCGTCCGGCTCCGAGGACCAAGTCGGCACGTAG
- Protein Sequence
- MDDYTKVTLQKICCTCLSIDRKLHQLCKLDDGINNLFFLLSSDSEAYKAMFSRDATLLFICWECSAIMIRQRKFIEQVCIAQKQLSQIIDQQLLLSSAISLSKLNSFHQNTHNVHFLHVDNIENFVDCGPDINDIKCEPESNINNESANDSTDEYNTELIEDINIEVSECSIEVKPLVKKTSEFQKEILGKKGSVQRKVKNETDNAIKEDVCLNEQEIVGHVEIKKLEHRNVNVISINDTKCGSESNMINESAGDSSDEYNVELIKNIKVSEYSIEITPLRKKTRELKKDNLSKKGSVKRKFKDETDGVVEKNAFSKIKMSEHVMVECDEIKMLEEKNVNVTSINDTKCGLESNINNKSANYSSDEYNTEHIDEIKVSDRGIEIQPLVKKTRELKKDNSSKKGSVKIKVEHETDDATKEDGYSKIIMTEEEMVESVEIKKLEESYVNATSKCESCVAVFKDENELEEHNSRLHEQKTKFVKCDICLVYIKYQWLSEHRDGHYRKYQCNYCELVSYTLIDILTHLRVFHSMKDALPPGMLKKLKRKAMLTNPVLVPKKQNQVQTDGESPLGFKCNECNKYFENRYLRYRHIMRSHREGHKCPTCGKTFALKHALNIHLLIHSDAPPKQPCPICGKLLRTDCLRVHARVHSERKSVECVSCDKRFISHDSYERHLKYSSKHAVKDIRKYKCTICEKRFRTKRELSDHIDYNHMGRTQHKCPICDKPLATGASVTLHVSRAHHGVKKSREKLLCKTCGKAFTNKKCLREHELIHSGEKPLSCDECGRTFRQSACLYTHKRRVHKMATKMARVWHASGSEDQVGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -