Mdei013968.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- Zfa
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000016.1:6466340-6471783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00014 0.011 16.8 2.6 2 21 164 183 163 184 0.94 2 18 3.5 2.8e+02 2.9 0.5 3 23 192 212 191 212 0.91 3 18 0.7 56 5.1 0.4 1 23 217 240 217 240 0.95 4 18 0.024 2 9.7 0.8 3 23 245 267 244 267 0.91 5 18 0.019 1.5 10.1 1.6 2 21 271 290 270 291 0.92 6 18 0.00014 0.011 16.8 0.6 2 23 335 357 334 357 0.95 7 18 0.0015 0.12 13.5 0.8 1 23 390 412 390 412 0.98 8 18 0.011 0.85 10.9 0.4 1 23 418 441 418 441 0.97 9 18 0.0018 0.15 13.3 0.3 3 23 452 473 451 473 0.98 10 18 0.059 4.8 8.5 7.4 1 23 484 506 484 506 0.98 11 18 1.1e-05 0.00092 20.2 0.5 2 21 638 657 637 658 0.94 12 18 0.0022 0.18 13.0 3.6 1 23 689 711 689 711 0.98 13 18 0.0075 0.6 11.3 5.1 2 23 717 738 716 738 0.95 14 18 2.5 2e+02 3.4 3.7 1 20 741 760 741 762 0.91 15 18 3.2e-05 0.0026 18.8 2.1 1 23 776 799 776 799 0.93 16 18 0.00053 0.043 15.0 3.7 1 19 805 823 805 827 0.93 17 18 4.3 3.5e+02 2.7 0.7 1 23 861 884 861 884 0.79 18 18 0.0014 0.11 13.6 0.8 1 23 891 914 891 914 0.96
Sequence Information
- Coding Sequence
- ATGAATAGACAGGTGGATATTAAAGCCTTAGTTTCGCATGTTATTCGTGGAGACGGAGTAAATAGGTGCCGAATATGCATGGGTGATACGTCTGAGGGACAAGTACACCTAAGTGATACGGTGGTGATGGAAGGTGATAAACCTGTTACTTTATCTGAACTGCTGGAAATCGTCACGGGAATTCAGGTGCTGCTTGATGGAGACTTGCCAGCAGGAGTCTGTTTGGAATGCTCTATGTGCGCAATAAACGCCGCCGAGTTCAGGATGCTGTGCCGACAAGTTTCGAACAAATGGAATATGACCTTACAACTGTTGTACAACTTACCTATGCAGCAAGCaggaaatgataaaattatgtttGCTATAATAGAGAGTGATCAAATGATTGTCATCAATGATAAGTATCACCTAGACCCAGATTCGGCAGCACAAAGACTGACAGCACATCTAACAAAACAGGATGTTGATACAGAAGCGAGGATATCCTGCCAGTGTCCAAATTGTGGGAAGAGATTCACAAACGCACAGAAACTGTATCACCATTTGAAAGCATCTACTGATCTAAAAAGAGCGTGCCATATTTGTAGTAAGATCATGATGCGGGATGATCTCATATCTCATATTATTAAATCGCACAACAGAGAGCCTTATGATTGCAAGAAGTGTCCTGCGATGTTACTGACCAATAAACAGTACATACAGCATCTCATGAAGGCACACTCAAGCGGGTCATGCACGTGTATCGACTGCGGCCAGACTTTCCAATCATCAAATGCATTTTATGCCCATGTATCCATCCACAGACAGAAAAGCTGCCCCAGTTGCGATAGGATATTCCGAAATCAGTCCTGCTATGTTTATCACGTCAAACGATGTTGCAACCTAGGTAGAAGCAAACACAGCATTCTGCGCACTAAGACTAAAGTCACTGTTGAAGTCAAGAACGAGAAAAGTAGGCGAAAAGTCAAAGTGGGCTTACGCGGCAGCGCTGATACTGAATGCGTGTGTAATGAATGTGGGAAGAAGTTcgcaaagaaaaaatatatagcagcTCACATACAGATAGTCCATATGAAAAATACGCATCGGCCTTGTGCTTATTGCGGAAAGCTTTTAGCCACAGCCCATATGACGGAGCATATTAAAAAGCACGAGATAGATTATTCTTACACCTGTGAACACTGTGGCATAGTACTCAAAACAAAGCTTGGTTACGTCCAACATTTGAGATTGCATACGGGGGAACGGCCTTATGCTTGCAAATTATGCGGTGAAACCTTTATGGCTTCTTCTAGAAGGTCAGAACACATGCGTAAAGTGCATAAAGGACCAGAGATTGTTCTGAAACATGGATGCAAATTGTGTCCAGCTAGATTCAGGTTACCATACCGATTAAAAAAGCACATACAAACGGCGCACAATAATGAACCCGGCGATAATTTTGTACAGTTTGAGTGTAAAGAGTGTCACGAAAAGTTTGGATCGTGCCGTGGCTTGTTGCATCATAGCAGAAAACATCAGAATGTGGCATTTCCGCATAAGAATCCCGAAAAGTCAATTGTGCTCAAAGTCACGGAGGAGACCGAAATGCCTGGAAGCCTTTGCAGCGACTGTATCAACAGCACTTTAGTAGCGTGGAATTTCAAATTGCTATGTCGCAAGTCTCTTCTAGAATGGAATCGAATATCCACAGTACTGAACAGTAATATCGTGGAAGCAACCCAGAAAGAAACTACCTTATATATATGTTGTAATAAAGAGAATGTGATATTCAAGGACAACGTGGCCACACGTTCTTTAGCTGAGGCTGCCGAGAGACTCAGTCGCATCGCCGattcgaatttaaaaaaaactcgcccaAACACGAAACACCGAAAAAAGCGCCCAAAGACTAGtaactatattaaaaacaagTGTCATATTTGCGGTAAAGTGTTCAGTTTACCTTATTATTTGAACAAACATTTATTGAATACGACAAAGCGGGCGTGTACGCTATGCGGCAGTGTTCTGCCTAGAGAGAGATTACACAAACATTTGAAAGATTTACATCGGAAGTTCGTCTATTACTGCGAAATTTGTCACAAATTATTCGATGACAGAAGAGATTACAACAGTCACAGAAAACTACATGCGGTGAGCACACTGCAGTGCAGGATGTGTAGACATTGCTTTAAAAATGAGAGATCTCTACGTGCGCATATGTATGCTCACACATTGTTTAATTGCTCATCATGCAACACcagttttgaaaatagaaaatgCTATGTTTACCACAAAGAGAATTGCACCATACAGCAGCAGGCCTCTGAGGTTGATGGCACTTATGAATGCCATGATTGCGGGAAGAAATATACAAAGAAACCGTCATTGCGAATGCATATTGTCcaaaaacatttaaacataCTCCCTTATGTCTGTCAAGTATGTGGTAAGCGTTGTTCGACAAAGAATCATCTAAAGTCACATGATTTAGTGCACAAATCCGAAAGGAAAGTGTACCAGTGCTATTGCGGTGCGAAAATGATGACATCGCTTGGATTTCTCATGCATCAAAGAATACATTCCGGTGAAAAGCCGTACGAGTGCCAGGAGTGTGGTGACAGGTTCCTTTCGTCGTCCAGAAGGTTAGATCATGTGAAAAGAAGGCATAAGATCTCGGGGATGTCGCATATCTGCGATAAATGTGGCGCTAGATTCCTCAGACCATTCGAACTTAAAAAACACGTTCAAACTGCTCATTCGATTCACATCATTAATTGA
- Protein Sequence
- MNRQVDIKALVSHVIRGDGVNRCRICMGDTSEGQVHLSDTVVMEGDKPVTLSELLEIVTGIQVLLDGDLPAGVCLECSMCAINAAEFRMLCRQVSNKWNMTLQLLYNLPMQQAGNDKIMFAIIESDQMIVINDKYHLDPDSAAQRLTAHLTKQDVDTEARISCQCPNCGKRFTNAQKLYHHLKASTDLKRACHICSKIMMRDDLISHIIKSHNREPYDCKKCPAMLLTNKQYIQHLMKAHSSGSCTCIDCGQTFQSSNAFYAHVSIHRQKSCPSCDRIFRNQSCYVYHVKRCCNLGRSKHSILRTKTKVTVEVKNEKSRRKVKVGLRGSADTECVCNECGKKFAKKKYIAAHIQIVHMKNTHRPCAYCGKLLATAHMTEHIKKHEIDYSYTCEHCGIVLKTKLGYVQHLRLHTGERPYACKLCGETFMASSRRSEHMRKVHKGPEIVLKHGCKLCPARFRLPYRLKKHIQTAHNNEPGDNFVQFECKECHEKFGSCRGLLHHSRKHQNVAFPHKNPEKSIVLKVTEETEMPGSLCSDCINSTLVAWNFKLLCRKSLLEWNRISTVLNSNIVEATQKETTLYICCNKENVIFKDNVATRSLAEAAERLSRIADSNLKKTRPNTKHRKKRPKTSNYIKNKCHICGKVFSLPYYLNKHLLNTTKRACTLCGSVLPRERLHKHLKDLHRKFVYYCEICHKLFDDRRDYNSHRKLHAVSTLQCRMCRHCFKNERSLRAHMYAHTLFNCSSCNTSFENRKCYVYHKENCTIQQQASEVDGTYECHDCGKKYTKKPSLRMHIVQKHLNILPYVCQVCGKRCSTKNHLKSHDLVHKSERKVYQCYCGAKMMTSLGFLMHQRIHSGEKPYECQECGDRFLSSSRRLDHVKRRHKISGMSHICDKCGARFLRPFELKKHVQTAHSIHIIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -