Mdei003818.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000005.1:797263-816572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.3e-05 0.0067 17.5 2.2 1 23 218 240 218 240 0.99 2 12 0.15 12 7.2 0.3 1 23 247 270 247 270 0.93 3 12 2.1 1.7e+02 3.7 2.8 1 23 274 296 274 296 0.91 4 12 0.01 0.83 10.9 1.0 1 23 301 324 301 324 0.94 5 12 0.0012 0.099 13.8 0.1 3 23 330 351 329 351 0.97 6 12 0.4 33 5.9 0.3 2 20 362 380 361 381 0.89 7 12 0.00045 0.036 15.2 0.0 3 23 395 415 394 416 0.94 8 12 0.0012 0.1 13.8 0.8 3 23 423 444 422 444 0.96 9 12 1.1e-05 0.00085 20.3 0.9 2 23 465 486 464 486 0.97 10 12 0.00026 0.021 15.9 3.4 1 23 492 514 492 514 0.98 11 12 1.1e-05 0.00088 20.3 4.1 1 23 520 542 520 542 0.94 12 12 1.8e-05 0.0015 19.6 4.0 1 23 548 571 548 571 0.98
Sequence Information
- Coding Sequence
- ATGGCTGAATTATTAGCGTGTCGGGTGTGCCTCGCGACAGATAATGTTAAAttatacaacatgtttcaaTTCAACTTCGTACCAGCTTACGAGGCCCTCACTGGTATCGAgtttTCGCTGCAAGATGGGCTTCCTCAACACATTTGCAGCTTCTGCAGTGTCTTGCTAGTGAAGAGTGTGTCCTTTAAAGAAAAATGCTGCACGACACAACAGATTTTGTTGAACTCAGTTGGACCACACCAGGAGCTGACATTAGAGAATCTACGTTTAATAAACCATCAGTTTGAGTTGAACTTGGTCCACGAAACCAATTATCCTACTGTTTACATAGAATATGTCGAACCCGATATCAAAGAGGAGAGCGTAGAGTTCGACCAGTTCCAAGTGGAGAGTAAACCTAAGAAGGGAAAGAAGAAGAGAATCAAGGAAGAGATTGAGGAGATAGTTAAGTTGGAAGAAGAGATCATACACGATCACGACTATGACGGGTCAGTGGAGTACGAGGTGAACGTGACAGACACCCAGGAGGTGGACGACGAGCTCGCTGCCCCTGAGGACCTGAGAGACGTGGAGGTGGTGCTGCTGAGCAAGGCCGACCAGCTCCAAGAGATAGAGCAGAGGAAGACCTCCTCAAACTACGTGAACTCCTTCTACAAGTGCGACAAGTGCTTCAAGGGCTTCATCACGGATTCCACTTATAGGAATCACATGTTGAGCCACGATGCGGACCGCGGAAAGTACGTCTGTGATATCTGCCATTCGAGATGGCCACAAGCACGTCAGCTACGCACGCACATAGTCAACTCTCACGAGAGGAAATACATCTGCAAGTTGTGCGACCACGTCTCCAGGTCCAGTCACCGTGCGAAGGAGCACTCGAATTGGCACAACGGATACACATTCGCCTGTAAGATTTGTGGGGCTACTTTCGCGAAGTCGACGAGTCATCTCACCCATATCCGCCTGCAGCATCCGTCGAGCAACGCTTGCGACATCTGCGGGGAGTCTTTCATCGGAGAGTTTGGTTTGAGAATGCACAAGAGGAAAGCTCATTCCCTGTTCCAGAACACGTACGCGCCGTCTCAGTGTACGCAGTGTGACGCGTCGTTCCGCTGCATAGAAGCGTTGGCGCGGCATCTCGACGGGACGAAGGGTGAAGGTTGCGACCTCAGTATGAGGCCGTGCCCATACTGCGGCGAGGGGTACCCATCTGATGGTGACCTTAAAGAGCATATTCAGGAACACCATAAAAACGAGAGCGCCTACTGCTACGAGTGCAAGAGGAGTTTCACCAACGAGCGTTCCTACGCGATCCACTACCAGAGGGTGCACTTAGGGGTCAAGCTGCGTCAGAGGAAGCCGAAATGCCTCAAGCGGCCCAGCGAGAGCGTGGTGTGCGAAATATGCGGCAAGAAGTGTATTACGAAGGCCACCCTGACTTATCATCAGCGCATCCATACCGGCGAGAGACCCTTCCACTGCACCGAGTGCCCCAAGAAGTTCAGCGTGTTCCAACGGCTGCAGATTCACTTGCGCACGCATACCGGGGAAAGTCCGTACAAATGCAAGCACTGTCCTAAAGCGTTCAAACACAAGGCCGCCCTGAACAGGCACGACCGGGTGCACACGGGGGTGAAGCCGTACAGCTGCGCTCACTGCGGCAAGTGCTTCTCGCAGTCCAACTCCATGAAGCTGCACGTGAACACGGTGCACCTCAAGATGCCGGCTCCCTACCGCAGCAGGAGGGGCAAGAACAACTGA
- Protein Sequence
- MAELLACRVCLATDNVKLYNMFQFNFVPAYEALTGIEFSLQDGLPQHICSFCSVLLVKSVSFKEKCCTTQQILLNSVGPHQELTLENLRLINHQFELNLVHETNYPTVYIEYVEPDIKEESVEFDQFQVESKPKKGKKKRIKEEIEEIVKLEEEIIHDHDYDGSVEYEVNVTDTQEVDDELAAPEDLRDVEVVLLSKADQLQEIEQRKTSSNYVNSFYKCDKCFKGFITDSTYRNHMLSHDADRGKYVCDICHSRWPQARQLRTHIVNSHERKYICKLCDHVSRSSHRAKEHSNWHNGYTFACKICGATFAKSTSHLTHIRLQHPSSNACDICGESFIGEFGLRMHKRKAHSLFQNTYAPSQCTQCDASFRCIEALARHLDGTKGEGCDLSMRPCPYCGEGYPSDGDLKEHIQEHHKNESAYCYECKRSFTNERSYAIHYQRVHLGVKLRQRKPKCLKRPSESVVCEICGKKCITKATLTYHQRIHTGERPFHCTECPKKFSVFQRLQIHLRTHTGESPYKCKHCPKAFKHKAALNRHDRVHTGVKPYSCAHCGKCFSQSNSMKLHVNTVHLKMPAPYRSRRGKNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01017949;
- 90% Identity
- -
- 80% Identity
- -