Mdei003795.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000005.1:532256-533683[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.7 4.6e+02 2.3 9.1 1 23 106 128 106 128 0.97 2 13 4.2e-05 0.0034 18.4 1.5 1 23 134 156 134 156 0.98 3 13 0.00064 0.052 14.7 2.5 1 23 162 184 162 184 0.98 4 13 0.00044 0.036 15.2 4.3 1 23 190 212 190 212 0.98 5 13 0.077 6.2 8.2 5.9 1 23 218 240 218 240 0.98 6 13 0.0019 0.15 13.2 4.4 1 23 246 268 246 268 0.98 7 13 0.00014 0.011 16.8 4.5 1 23 274 296 274 296 0.98 8 13 0.013 1.1 10.6 2.5 1 21 301 321 301 322 0.94 9 13 0.0014 0.11 13.6 6.5 1 23 328 350 328 350 0.98 10 13 3.5e-05 0.0028 18.7 5.8 1 23 356 378 356 378 0.99 11 13 0.00026 0.021 15.9 2.4 1 23 384 406 384 406 0.98 12 13 0.00011 0.0087 17.1 4.5 1 23 412 434 412 434 0.98 13 13 6.2e-05 0.005 17.9 4.4 1 23 439 461 439 461 0.98
Sequence Information
- Coding Sequence
- ATGAAGCCAGCATCAGAAGATTATTTAATGTCGGTGAAGACGAAATCTCACACACAGTGTGATTCAAAGGGAATTAATTTAACCATACAAGAAAATGAAGTAGCTAAATGTGAAAACAATATTGTTGAAGAAACAGTTATAGAAACAGCAGAAACAAACACTGTAATGGCTGAAATAAGACCAGGACATAGTGACATGaatgaagaattaaaaaaagaaaacgaaGGTACAGTTTTCGAACTTGAAATCAGCCATGAATCGAACACAGAATCTCTTCTGCAGTTAAAGACAGATAAAGTGAAAAATGGAAAAATATATGCATGTTGCCATTGCACATTCGTAActaagtatagatgtaatttGATCATGCATAACAAAAAacacactggtgagaaaccttttGCATGCAGtgtttgttattataaattcgGACAGAAGACTCAACTAGACAACCATATGCGGACTCACACTGGAGAGAAACCTTTCTCGTGTACTATATGTGAATATAAATGTGGGAGAAAGGATAGATTGATAATCCATATGAAATCTCACAACGATGAAAAACCATTCTCGTGCAGTGTATGCAGTTATAAATGTAAACTGAAACAGAACTTAGTAAGTCATATGCGGACTCACTCTGGTGAAAAACCTTATGCGTGCACTCTGTGCAAGTATAAATGCAGTTGGAAGCAGCATTTAGTCAAACATATGACGACTCACACTGGAGAGAAACCTTTTTCTTGCAAATTTTGCAGTTACAAATGTGGTGTAAAGCAGAATTTAGTCCAACATATGCGGACTCACACCGGAGAGAAGCCTTACACTTGCAACATATGCCAATATAAGTACTGTCAAATGAATAGTTTAAAGAAACATATGAGTGTTCACAGTGATAAAATTTTCTCCTGTAatatttgcaaatataaatgCACTTTAAAGGAGAGTTTGGTTAAGCACAGAGAACGTTGCGGTGAGAAACCTTTCATTTGTGACTTTTGTGGTCACAAATGTAGTCTGAAACATAACTTAGTCAGTCACATACGAACTCACACCGGTGAGAAACCGTTCACATGTAATATATGCCAGCGTAAGTGCAGTCATAAGGGTGATTTGGATCGTCATCTGAGGACTCATACTGGAgagaaacctttctcatgtGATCTATGCGATTATAGATGTGGTCGGCAGTACAGTTTGGACCAGCATATGCTGACTCACACCGGGGAGAAACCTTTTCCTTGCGGCATGTGCAATTACAGATCTAGTCACAAACACAGTTTGGTCAATCACATGAGGACCCATGGTGAGGGACCATACCATTGTCAGATATGTGGACATAAAAGTCCAAGGAAATATGATTTGGAACGGCATATGAAGAATCATGTACGAATAAAAGCCATAGATCAAATATTCAGAATGATCAACTaa
- Protein Sequence
- MKPASEDYLMSVKTKSHTQCDSKGINLTIQENEVAKCENNIVEETVIETAETNTVMAEIRPGHSDMNEELKKENEGTVFELEISHESNTESLLQLKTDKVKNGKIYACCHCTFVTKYRCNLIMHNKKHTGEKPFACSVCYYKFGQKTQLDNHMRTHTGEKPFSCTICEYKCGRKDRLIIHMKSHNDEKPFSCSVCSYKCKLKQNLVSHMRTHSGEKPYACTLCKYKCSWKQHLVKHMTTHTGEKPFSCKFCSYKCGVKQNLVQHMRTHTGEKPYTCNICQYKYCQMNSLKKHMSVHSDKIFSCNICKYKCTLKESLVKHRERCGEKPFICDFCGHKCSLKHNLVSHIRTHTGEKPFTCNICQRKCSHKGDLDRHLRTHTGEKPFSCDLCDYRCGRQYSLDQHMLTHTGEKPFPCGMCNYRSSHKHSLVNHMRTHGEGPYHCQICGHKSPRKYDLERHMKNHVRIKAIDQIFRMIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -